Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01153 ATGGCAGCTTGTACTGTCTACTCAACACAAACTCTAAGAACAAACATCTCAATtccaacatcatcatcaaaaacACATGTTGGATTTCATCAAAAACAAGTAGTTTTCTACACAAAAAGCAACAACAAAAGAATTAACAGCAACAACAGATATTTGATAACATGTAAAGCAAGTGACTCACAAACAATTGTGATTGGTTTAGCAGCTGATTCTGGCTGTGGAAAAAGTACTTTTATGAGAAGACTCACAAGTGTTTTTGGTGGAGCAGCAGAACCACCAAAAGGTGGTAATCCTGATTCAAACACACTTATCAGTGACACAACAACTGTTATATGTTTGGATGATTATCATTCTTTGGATAGAACTggtagaaaagaaaaaggtgTTACTGCACTTGATCCAAGAGCTAATGATTTTGATCTTATGTATGAACAAGTTAAAGCTATTAAAGATGGAATTTCTGTTCAAAAACCTATTTATAATCATGTTACTGGTCTTTTGGATCCTCCTGAGCTTATTAAACCTCCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTATGATTCTAGAGTTAGAGACCTCTTGGATTTTAGCATCTACTTAGATATTAGTAATGAGGTGAAATTTGCATGGAAAATTCAGAGAGACATGGCAGAACGTGGACACAGTCTTGAAAGTATCAAGGCTAGTATTGAAGCAAGAAagcctgattttgaagcttatATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACTCAACTCATTCCTGATGATAATGAGGGAAAGATTTTAAGAGTGAGGTTAATCCAAAAAGAGGGTGTTAAGTACTTTAGCCCAGTTTACTTGTTTGATGAAGGTTCAACCATTTCATGGATACCATGTGGAAGGAAACTTACATGCTCTTACCCTGGcattaaatttttctatggaccAGAGTCTTACAAAGGAAATGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAATTAATATATGTTGAGAGCCACTTAAGCAACCTATCTTCAAAATTCTATGGAGAAGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATTTGAGCAGATAGTAGCAAGCAGGGCTGAGACTCCAGTAGGAGCAACAAAAGCTTAA 1227 0.3415 MAACTVYSTQTLRTNISIPTSSSKTHVGFHQKQVVFYTKSNNKRINSNNRYLITCKASDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGISVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPESYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGATKA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01153 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Tsu05g01153 408 Gene3D - 59 293 IPR027417 -
Tsu05g01153 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tsu05g01153 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tsu05g01153 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tsu05g01153 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tsu05g01153 408 PANTHER PHOSPHORIBULOKINASE 7 408 - -
Tsu05g01153 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Tsu05g01153 408 PANTHER URIDINE KINASE 7 408 - -
Tsu05g01153 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 332 IPR027417 -
Tsu05g01153 408 CDD PRK 64 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01153 Tsu-Chr5 10115796 10119602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01153 116 290 PRT Gene Family AT3G27440 25.843 2.70e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01153 K00855 - gmx:100807126 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01153 05 10115796 10119602 Tsu05g01153 05 10115796 10119602 ECH