Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01151 ATGGGTAACTCAAACGGACATCATCATCGCAAACACCGTTTTTCTGTTCCAAACAACACGGTTCCTCCTCCACCTTATAAATACGCTGCTACCTCTCAACTTCATAATCCACCAAACCAAAACGTAGGTAGTAGTAGTTCCAATTCAAACATCATGATTTCTTTGCCTTATGCCAACGCCGACATTACTCTCCGTTCCCTTGCTGCTCAGGCTGAAGGCTTTGGCCGCTTCGCAACCGGTGGACTTCATGGTTCTCTTTATCATGTCACATCACTCTTAGATGATGGACCGGGATCATTGCGTGACGCATGTCGCAAAAAAGAGCCTTTGTGGATTGTGTTTGAGGTTTCGGGTACAATTCAACTTTCGTCTTACTTGAATGTGTCATCATACAAGACCATTGATGGAAGGGGACAAAGGATTAAGCTGACTGGAAAGGGTTTTCGGCTGAAGGAATGTGAACATGTAATCATTTGTAATTTAGAGATCGAAGGAGGCAGAGGACCTGATGTTGATGCTATTCAAATTAAACCTAATTCAAAACATATATGGATAGATCGTTGCACTCTCAGTGATTTTGAAGATGGGCTCATTGATATCACTCGAGGAAGCACTGATATTACAATTTCAAGGTGTCACTTTCATCAGCATGACAAAACAATACTCATTGGATCAGATCCCAAACATGTTGATGATAGATGCATGAAGATCACCATACACCACTGTTTTTTCAATGGTACTCGACAAAGACATCCTCGTGTTAGGTTCGCAAAAGTACATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTTGAATCCCAGATCTTCTCTCAACATAATATCTATGAAGCCGGCCAGAAGAAGGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAGGACGCTGAAGCAACTGGACACATAATTTCTGAAGgagatatatttttaaatggtGCTCAACCAGGGTTGATGACAGAGAATGTTGGGGTTAAGGTGTTTCATCCGAGTGAACACTATCTCACATGGACAGTGGGACCTCCTACAGATGACCTAAAGCAAGTTCTTCATCATTATACCGGATGGCAATCTGTTGCGAGGCCAGCCGATCAAGCCATTTGCGCAGAATAA 1152 0.4193 MGNSNGHHHRKHRFSVPNNTVPPPPYKYAATSQLHNPPNQNVGSSSSNSNIMISLPYANADITLRSLAAQAEGFGRFATGGLHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIQLSSYLNVSSYKTIDGRGQRIKLTGKGFRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKITIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKDAEATGHIISEGDIFLNGAQPGLMTENVGVKVFHPSEHYLTWTVGPPTDDLKQVLHHYTGWQSVARPADQAICAE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01151 383 MobiDBLite consensus disorder prediction 32 47 - -
Tsu05g01151 383 Pfam Pectate lyase 125 288 IPR002022 -
Tsu05g01151 383 SUPERFAMILY Pectin lyase-like 70 377 IPR011050 -
Tsu05g01151 383 Gene3D - 57 350 IPR012334 -
Tsu05g01151 383 PANTHER PECTATE LYASE 49 375 - -
Tsu05g01151 383 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g01151 383 MobiDBLite consensus disorder prediction 1 47 - -
Tsu05g01151 383 PANTHER PECTATE LYASE 18-RELATED 49 375 IPR045032 GO:0030570
Tsu05g01151 383 SMART amb_all 97 295 IPR002022 -
Tsu05g01151 383 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Tsu05g01151 383 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tsu05g01151 383 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01151 Tsu-Chr5 10100426 10103599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01151 92 380 Polysaccharide Lyase AT3G55140 73.356 1.08e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01151 K01728 - gmx:100814368 618.231