Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01143 ATGGAAAGTGGTGGGAGAGAAGGGTTTGATGGAGTGATGATGACGATGACAAGAGACCCGAAACCGAGGTTAAGGTGGACAGCCGATCTTCACGACCGGTTTGTCGATGCTGTCACAAAGCTCGGTGGCCCTGATAAGGCAACTCCTAAGTCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAACATgctcaaaaacaaaatgaagaacAATTCAAAGAGAATAACAGATGTTCGTATGTAAATTTCAGTAACCATTCTACTGGGACTAATACCAATTATGGAGGTGATAATGAAGGGGGAGAAATCCCAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAGAGATTGGAAGAACAACTTGAGGTACAAAAGAAATTACAAATGAGAATAGAGTCTCAAGGGAAGTATTTACAAACAGTGTTAGAGAAAGCACAAATGAGTCTTTCACAAGATGAACATGGCAATATTGAAGCATCAAAAGCTCAATTAGCTGAATTCAATTCAGCTTTATCAAATTTCATGGAAAATATGAACAAAGATAGTAAAGAAAACATAGTAGACATAAATGGACTTTATAATAAGAATTATAGCTCATCTTTCAATTATCAAGAAGTATTAGGGACAGAAGAAAATAAGGATCTAAAGCCTCAAATTGAAGGAGGGTCAGTACAATTAGACTTAAACATCAAAGGTGGCAATGAACTTTTATCTACAAATGGAGCTGGAATGGATTCAAAGATGGTTTCATATAGGCCGTTTTCCAGCAGCCTGTTGATGACCCCATTAACTCCATCAAAGACTTTGACCCAGCGCTGGGGGACTATAAAAAGATCACTCCTCATTCTCACCAGGTACGCTATCTTTTATACAGAAAACCTTTGTTTCACTAtcactgacttgagcgtcggagcacctgcaggtacacaaccccctgcgGTTCCATCGGAGCGGAGCAAAGTGCAAACACCTTTGATGTCGCCGCaattggtcgactctgatcagATTATTCAAAGTTATGGAGATTTGCTGTGTTTGGATGATTTGCTCGATGATCAAGACACTTTCAGTGATAAACTAAGTGGTTTGAATCGGTGCTTACATGCTTCTGATGACCGTCTTCTTAGCTATTGTGATCTCTCACATACTATAGAGGCTATAAAGTATCTTGTGGATGTCTCAGTGTATCAATTTGGGCAGTTATTTGAAGATTCAGATAGAAATGGATGGTTCACTAATGATAAATTTACACCGATGTTATCTTTCCTTAAGATCATCGGCCTTTGCTTACAATGTTTCAAGAAGTCGGATGGGGCGACGACATACATGGATGATTTGCTCCATGATAAAGAGACTTTGAATGATACACTAGTGGCACATGGCGTGATTAACGCTCGGCTCACTGCATTCAAACTCTTGGAGTTGGTTGTTTCTTTTCATCCTCTTTTCCTGCCTTCTGACTTTGACTGgATTATTCAAAGTTACGTAGATTTGTTGTCTTTGGATGATTTGCTCGATGATCGAGACACTCTTAGTGATACACCACGTGGTTTGACTCGGTGCTTACATGCTTCCGATGACCGTCTTCTTAGCTATTGTGATCTCCCACATACTATAGGGGCTATAGAGTATCTTGTGGATGTCTCACTGGATCTATTTGGGCAGTTATTTGAAGATTCAGTTAGAAATGAGATGTTCACTAAGGATGAATTTGCACCGATGTTATCTTTCCTTAAGATCATCGGCATTTGCTCACTGTGTTTGAAGAAGTCGGATGAGGCGACGACATACATGGATGATTTGCTCCATGATAAAGAGACTTTGAATGATACACCAGGTGGTTTGACTCGGTGCTTATTGCTCTTGCCTTGA 1923 0.3744 MESGGREGFDGVMMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHAQKQNEEQFKENNRCSYVNFSNHSTGTNTNYGGDNEGGEIPIGEALRQQIEVQKRLEEQLEVQKKLQMRIESQGKYLQTVLEKAQMSLSQDEHGNIEASKAQLAEFNSALSNFMENMNKDSKENIVDINGLYNKNYSSSFNYQEVLGTEENKDLKPQIEGGSVQLDLNIKGGNELLSTNGAGMDSKMVSYRPFSSSLLMTPLTPSKTLTQRWGTIKRSLLILTRYAIFYTENLCFTITDLSVGAPAGTQPPAVPSERSKVQTPLMSPQLVDSDQIIQSYGDLLCLDDLLDDQDTFSDKLSGLNRCLHASDDRLLSYCDLSHTIEAIKYLVDVSVYQFGQLFEDSDRNGWFTNDKFTPMLSFLKIIGLCLQCFKKSDGATTYMDDLLHDKETLNDTLVAHGVINARLTAFKLLELVVSFHPLFLPSDFDWIIQSYVDLLSLDDLLDDRDTLSDTPRGLTRCLHASDDRLLSYCDLPHTIGAIEYLVDVSLDLFGQLFEDSVRNEMFTKDEFAPMLSFLKIIGICSLCLKKSDEATTYMDDLLHDKETLNDTPGGLTRCLLLLP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01143 640 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Tsu05g01143 640 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 258 IPR044848 GO:0003700
Tsu05g01143 640 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Tsu05g01143 640 Gene3D - 20 78 - -
Tsu05g01143 640 Coils Coil 124 151 - -
Tsu05g01143 640 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Tsu05g01143 640 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Tsu05g01143 640 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 258 - -
Tsu05g01143 640 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01143 Tsu-Chr5 10020209 10030375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01143 14 190 G2-like Transcription Factor Family AT3G24120 51.366 2.29e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu05g01143 Myb_DNA-binding 7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01143 - - gmx:100810146 420.239