Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01133 ATGGCTACTCCAACATCAACACAAGATCTCTTGAAAATGGAGAATATACCTAACAAAGGTAGAGGCCTTATTGCAACACAAGATCTCAAAGCTGGCCAAATAATCCTCACTGAATCCCCTCTCCTTCTCTACTCTGCTTCACCTCTCTTTACTCCTACACCCTCCCCTTACTGTCACCATTGCTTCAGAACCTTACAGCCTTCACAAACATTTACATGTCCTTCTTGCTCAAACTACAATTTCTGCAGCCAAAAATGTCTCTCCATTGCCCTCAATTCTTCTCACTCACCTTGGACATGTGAAACACTCTCTCATCTTCAAAACCCCACTTCACCATTATTAGAAAAACCCTTTGAACTTCAAGTTCAAGCTCGTTTCATTGTAGCTGCTTACAATATTGCTATTCACACCCCTTCAATTATTCAAACTATACTTTCTCTTCATGGTGATCCTAATGATCATGATTCTATTGTTGATAATGCTAAGTTTCTTCAATCTCTTATCTCACctttttgtccaccaaacatgaATTTTTCAGCTGAACTAGCTGCAAAACTCATTGCTAAAGAAAGATTAAACTCTTTTTGCTTAATGGAACCTTATTCACCAAAGGGTCCTCAAAGATCTATTAAAGCTTATGTAATTTACCATAAAGCTACTTTTTTTAATCATGATTGTATTCCTAATGCATGCAGGTTTGATTATGTGGAAAATGGTGAACCTGGTGATGAACATAATACTGATATTGTTATTAGGTTGATTAAGGATGTTGATGTTGGAAATGAGatttgtataagctattttaggaTTAATAAGGATTACTTAACAAGGAAAAGGATTTTGATGGAGGATTATGGTTTTACTTGTGCATGTGATAGGTGTAAGATTGAAGCAAATTGGAATGAAGGAGAAAATAAGAGTGATCTGCCACATGTGATTTTCTTGTCCAAGTTTGTTTGTGATAAGGAGAATTGTGCTGGCACTTTGGCTCCTCTGCCTCCAAAAGATGGTGAAAAATCTAATGTTCTTGAGTGTAACTTTTGTGGTAATTTGAAAGTTGACTCTAGTGCTTAA 1074 0.352 MATPTSTQDLLKMENIPNKGRGLIATQDLKAGQIILTESPLLLYSASPLFTPTPSPYCHHCFRTLQPSQTFTCPSCSNYNFCSQKCLSIALNSSHSPWTCETLSHLQNPTSPLLEKPFELQVQARFIVAAYNIAIHTPSIIQTILSLHGDPNDHDSIVDNAKFLQSLISPFCPPNMNFSAELAAKLIAKERLNSFCLMEPYSPKGPQRSIKAYVIYHKATFFNHDCIPNACRFDYVENGEPGDEHNTDIVIRLIKDVDVGNEICISYFRINKDYLTRKRILMEDYGFTCACDRCKIEANWNEGENKSDLPHVIFLSKFVCDKENCAGTLAPLPPKDGEKSNVLECNFCGNLKVDSSA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01133 357 Pfam SET domain 20 267 IPR001214 GO:0005515
Tsu05g01133 357 SUPERFAMILY SET domain 9 292 IPR046341 -
Tsu05g01133 357 Gene3D - 57 109 - -
Tsu05g01133 357 ProSiteProfiles SET domain profile. 9 268 IPR001214 GO:0005515
Tsu05g01133 357 Gene3D SET domain 22 295 IPR046341 -
Tsu05g01133 357 SMART set_7 9 274 IPR001214 GO:0005515
Tsu05g01133 357 CDD SET_SMYD 192 294 - -
Tsu05g01133 357 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 6 355 IPR044238 -
Tsu05g01133 357 Gene3D - 110 194 - -
Tsu05g01133 357 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 6 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01133 Tsu-Chr5 9942510 9943777 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu05g01133 SET 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01133 - - cam:101515628 542.347