Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01130 ATGGAGAGGTACAAATTAATCAAGGAAGTTGGTGATGGAACGTTCGGGTGTGTCTGGAGAGCTATTAGTAAGCAAACTGGTGAAGttGTGGCAatcaagaaaatgaagaagaaatatTACTCTTGGGAGGAGTGTGTAAacctaagagaagtcaagTCTTTACGAAAAATGAACCATCCAAATATTGTGAAACTGAAAGAAGTTATTCGAGAAAGTGACATTCTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATATCAACTTATGAAAGACAGGGAAAAATTGTTTTCTGAAAGTGAAATTAGAAACTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCATCAGCGTGGTTACTTCCATCGTGACCTTAAACCTGAAAACTTGCTGGTTACTAAGGATATTATCAAAATCGCTGATTTTGGCCTTGCCCGTGAGATCAGCTCACAACCACCCTACACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTACATCTATGGCTCTAAAGTTGACATGTGGGCGATGGGTGCGATAATGGCCGAGCTGTTCTCTCTCAGACCTCTTTTTCCAGGAGCCAGTGAGGCAGATGAGATCTACAAAATATGTGGTGTGATAGGCAATCCAACTACTGAATCATGGGCCGATGGACTCAAACTTGCAAGGGATATTAATTATCAGTTTCCACAGCTTGCTGGCGTAAATCTTTCTGCTTTAATCCCATCTGCAAGCGATCATGCAATCAGCCTTATCCAATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACGGCTTTAGGGGCCCTTCAACATCCTTTCTTTCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCTCCAGAGCAGCAGCGAGAACTCCTCCACCTGGAACCAGGGGTGCACTGGTGGATCAGCAAGGGGTCAAGAGATATCCGGGTGCTCTACCCAATTCAAAGCCGACCAATTATTTTCCATCTCCAAAAGTACAACCTTCTTCAGGTGTTCAGCGGAAGCTGGATATGGTAAATCAGGATGGAGTTAAGAATGAAAAATCAATGAAGACTACTGCACAATCAAAATATCGACTGCCAGGAAAGGAAAGCCCAACTTCTATGAACAAAGGAAGAACTACACGCGGGGTTTCAGAGACTGCTGATAGGTTGGCCAATATGTCTCTTGGTAATCAAAGACAATCCATGGGGCAACCCCGTCCTCCAATGAAAGCTGGAGTTAATTGGAGTTCCGAATCTCCTAACTTCATGCTCAGGCCTTCACCACAGATTCCGACTGGAAGAACATACCCAAGAAAAGTTGCTGGATGA 1347 0.4306 MERYKLIKEVGDGTFGCVWRAISKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSESEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYIYGSKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICGVIGNPTTESWADGLKLARDINYQFPQLAGVNLSALIPSASDHAISLIQSLCSWDPCKRPTALGALQHPFFQSCFYIPPSLRSRAAARTPPPGTRGALVDQQGVKRYPGALPNSKPTNYFPSPKVQPSSGVQRKLDMVNQDGVKNEKSMKTTAQSKYRLPGKESPTSMNKGRTTRGVSETADRLANMSLGNQRQSMGQPRPPMKAGVNWSSESPNFMLRPSPQIPTGRTYPRKVAG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01130 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Tsu05g01130 448 CDD STKc_MAK_like 4 283 - -
Tsu05g01130 448 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01130 448 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01130 448 MobiDBLite consensus disorder prediction 403 448 - -
Tsu05g01130 448 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 414 - -
Tsu05g01130 448 MobiDBLite consensus disorder prediction 420 434 - -
Tsu05g01130 448 Gene3D Transferase(Phosphotransferase) domain 1 84 289 - -
Tsu05g01130 448 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tsu05g01130 448 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Tsu05g01130 448 MobiDBLite consensus disorder prediction 327 347 - -
Tsu05g01130 448 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Tsu05g01130 448 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01130 448 MobiDBLite consensus disorder prediction 320 389 - -
Tsu05g01130 448 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 414 - -
Tsu05g01130 448 MobiDBLite consensus disorder prediction 356 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01130 Tsu-Chr5 9888540 9893327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01130 1 290 Core Cell Cycle Gene Families AT3G48750 37.584 1.95e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Tsu05g01130 Pkinase 5.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01130 K08829 - gmx:100810150 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01130 05 9888540 9893327 Tsu05g01130 05 9888540 9893327 ECH