Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01124 ATGGCTGTGAATCTAACACCAGGTGCGATTAAGACGATGTGTTTCACTTCCGAAGAATTGCAACCGGTGTTACAAGTTATCGATTTGAAACTTGTTCAAGCGCAGAATAATAGTACTACTGAAAGGTACCGATTAGTTCTCTCTGATGGTTCGTATTATCAACAAGGAATGCTCGCTACTCAGAAGAATCAATTGGTTAAAAATGGAGATTTGCAGAAAGGTTCCGTTGTTAGACTCACTCAATATGTTTGTAACGATGTTCAGAATCGCAAgattattattattgttgatcTTGAGGTTATGCTGAGAATATGCGACTTGATTGGGAATCCTGTTTCGGTAAAAGACTTACCTGCACAATCTGGTGTGAGTCAAGCAGGAAATGTACAACCAGCTGCTGGTCAATTAGGAAACAATGCTGGAAATTCACAGTATTCAAACAGTAATTCCCATGCAGGTGGTGTTAATGTTAGACCAAACATGGCTGCGCCATCTATAGATCGTTCGAATGTGAATCCTTCTGCCAGTAGTGTTTATTCTAACAGTTCTGAACCTGCAAGATACGGTGCATCTAATGTTCCTCCATCGTATGCTAAACCTGAGCCTGGAGTCGGTTTGAATAGATCTGCACCAGTCAATGGGTCTTATGGTGAACAGAATACAAGTTTCCGCAATCCACAATACCAGGCTTCAAATGCAGTGCAAAATTCTTACCCTCGCCCTCCTCAGCCTATGAATCGACAGCCATCTCCAATGTACACCAACAGAGGCCCTACAGGAAGAAATGATGCTCCTCCAAGGATACTTCAAATATCTGCATTGAATCCATATCAGAATAACTGGACAATTAAAGCCAGAGTTACGACTAAAGGAGAACTTAGGCACTATAGCAATACCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTTATGGTGGCCAAATACGGGCAACTTGCTTTAATGCTGTGGCGGATCAGTTCTATAATTTAATTGAAGTCGGTAAAGTCTATCTTGTTTCCAGGGGAAGTTTGAAGCCAGCTCAGAAGACTTATAATCACCTTCCTAATGAATATGAGATAACCCTTGATATGACATCAGTTATACAGCCATGCCTTGAAGATGATAACTCAATTCCAAAGCAGATGTATAATTTTCGTTCCATTGGTGACATTGAAAGTATGGAAAACAACAGCATTGTGGACATGATTGCTGTGGTAACTTCCATCAGTCCCACAGCTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTTCAGTTGAAAGACAGGTCTGGCCGAAGTGTTGAATTGACTTTATGGGGAAATTTTTGCAACAGCGAAGGACAAAGGCTGCAAGAAAGATGTGACCGTGGGGAATTTCCAATTTTGTCTGTAAAATCTGCCAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACCATAACCACCAGCCAATTAATTGTAGAACCTGATTTTCCAGAGGCTCTTACACTGAAAGAATGGTTTGACAAGGAAGGGAGGAATGTCCCAAGTCAATCTATTTCCAGAGAATCATCTAGTTTTGGTCAAAGTGAAGTGCGGAAGACTGTAAATCAAATTAAGGATgaaaatttagggactaaagAGAAGCCCGACTGGATATCTGTCTGTGCAAATGTTTCATTCATTAAAAGTGACCCTTTTTGCTACACAGCTTGTCCTATCATGATAGGAGATAGACAATGTAACAAAAAGGTTACCAACGATGGAGATGGGAAATGGCGCTGTGACAGATGTGATCAGTCTGTTGATGCCTGTGATTATAGGTACTTACTGCAAATGCAGTTACAGGATCACACCGCTTTAACATGGGTTACTGCTTTCCAGGAAGGTGGTGAGGAGGTCATGGGCATGCCTGCAAAAGATTTATATTTTCTGAAACATGAAGAATCAGATGATGTAACATTTGCAGCAATCTTCCGCAAGGTTCTCTTTGGTAGATATGTGTTCAAGTTAAAAGTAAAGGAGGAGACATTTAATGACGAATCACGTGTTAAGTCAACAATTGTAAAAGCGGAGAAGGTAAACTTTGCATCTGATTCTAGATCTCTTCTGGATTTGATTGACAAACTTATGTCCGAGAATGCAGAAGGTACCACTATTAACTCTGTGATCAATAAAACTGGACTGGGGAGCCTTGAAACCGGACAAGTTATGCCACCCGTATATAATCCTATAAAGAGCAACGCTAATACGGGTAGAGATTATGGGACCCCAGCAAACCAAGTGGGTCAGTATGGAAACCAACACAACAGTTCTTTTGCTTCGTTAGGGGCGCCTGGTTCGTACATGTCATGTAGCACCTGTGGAGGCACTGGGCATAGCTCTGCACAATGCCTAAATATTAGAAATCAATCTGGACAGTCTGCTGGAGGAGGGGCCTTTGCCAACAGGGTATCTGCTGGATCAGGTGGAGTTTCTGGTAATTGCTATAAATGCCAACAACCTGGACATTATGCAAGAGATTGTCCTGGTATCACTGCAGCACCTTCAGATCAGTATTTGCAGCGCCCAACTGCTGGATCAGGTGGTGGTTCTGGTGATTGCTATAAATGCCAACAACCTGGTCATTGGGCGAGAGATTGTCCTGGTAACGGTGCAGCACCTCAATCTTATGGAAACAGTAATGCTGGGCAAGGAAGATATGGTACTGCTCAAAATGAGCAGTATGGAGGACGATATTGA 2742 0.4143 MAVNLTPGAIKTMCFTSEELQPVLQVIDLKLVQAQNNSTTERYRLVLSDGSYYQQGMLATQKNQLVKNGDLQKGSVVRLTQYVCNDVQNRKIIIIVDLEVMLRICDLIGNPVSVKDLPAQSGVSQAGNVQPAAGQLGNNAGNSQYSNSNSHAGGVNVRPNMAAPSIDRSNVNPSASSVYSNSSEPARYGASNVPPSYAKPEPGVGLNRSAPVNGSYGEQNTSFRNPQYQASNAVQNSYPRPPQPMNRQPSPMYTNRGPTGRNDAPPRILQISALNPYQNNWTIKARVTTKGELRHYSNTRGDGKVFSFDLLDSYGGQIRATCFNAVADQFYNLIEVGKVYLVSRGSLKPAQKTYNHLPNEYEITLDMTSVIQPCLEDDNSIPKQMYNFRSIGDIESMENNSIVDMIAVVTSISPTASIMRKNGTETQKRSLQLKDRSGRSVELTLWGNFCNSEGQRLQERCDRGEFPILSVKSARVNDFNGKSVGTITTSQLIVEPDFPEALTLKEWFDKEGRNVPSQSISRESSSFGQSEVRKTVNQIKDENLGTKEKPDWISVCANVSFIKSDPFCYTACPIMIGDRQCNKKVTNDGDGKWRCDRCDQSVDACDYRYLLQMQLQDHTALTWVTAFQEGGEEVMGMPAKDLYFLKHEESDDVTFAAIFRKVLFGRYVFKLKVKEETFNDESRVKSTIVKAEKVNFASDSRSLLDLIDKLMSENAEGTTINSVINKTGLGSLETGQVMPPVYNPIKSNANTGRDYGTPANQVGQYGNQHNSSFASLGAPGSYMSCSTCGGTGHSSAQCLNIRNQSGQSAGGGAFANRVSAGSGGVSGNCYKCQQPGHYARDCPGITAAPSDQYLQRPTAGSGGGSGDCYKCQQPGHWARDCPGNGAAPQSYGNSNAGQGRYGTAQNEQYGGRY 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01124 913 ProSiteProfiles Zinc finger CCHC-type profile. 829 843 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 222 709 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g01124 913 MobiDBLite consensus disorder prediction 122 260 - -
Tsu05g01124 913 ProSiteProfiles Zinc finger CCHC-type profile. 868 882 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 MobiDBLite consensus disorder prediction 889 913 - -
Tsu05g01124 913 Gene3D - 267 376 IPR012340 -
Tsu05g01124 913 Pfam OB-fold nucleic acid binding domain 281 365 IPR004365 GO:0003676
Tsu05g01124 913 SUPERFAMILY Nucleic acid-binding proteins 533 711 IPR012340 -
Tsu05g01124 913 PANTHER REPLICATION PROTEIN A SUBUNIT 3 750 - -
Tsu05g01124 913 SUPERFAMILY Nucleic acid-binding proteins 386 515 IPR012340 -
Tsu05g01124 913 CDD RPA1_DBD_B 402 509 - -
Tsu05g01124 913 CDD RPA1_DBD_A 270 373 - -
Tsu05g01124 913 SUPERFAMILY Nucleic acid-binding proteins 268 381 IPR012340 -
Tsu05g01124 913 MobiDBLite consensus disorder prediction 122 155 - -
Tsu05g01124 913 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tsu05g01124 913 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Tsu05g01124 913 Gene3D - 860 891 - -
Tsu05g01124 913 CDD RPA1N 8 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tsu05g01124 913 Gene3D - 519 711 IPR012340 -
Tsu05g01124 913 Gene3D - 3 115 IPR012340 -
Tsu05g01124 913 SMART c2hcfinal6 784 800 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 SMART c2hcfinal6 828 844 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 SMART c2hcfinal6 867 883 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 SUPERFAMILY Retrovirus zinc finger-like domains 819 849 IPR036875 GO:0003676|GO:0008270
Tsu05g01124 913 Pfam Replication factor-A C terminal domain 552 703 IPR013955 -
Tsu05g01124 913 Pfam Replication protein A OB domain 391 494 IPR031657 -
Tsu05g01124 913 Gene3D - 380 518 IPR012340 -
Tsu05g01124 913 Gene3D - 781 852 - -
Tsu05g01124 913 SUPERFAMILY Retrovirus zinc finger-like domains 855 885 IPR036875 GO:0003676|GO:0008270
Tsu05g01124 913 PANTHER REPLICATION FACTOR A 1, RFA1 3 750 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu05g01124 913 MobiDBLite consensus disorder prediction 163 189 - -
Tsu05g01124 913 MobiDBLite consensus disorder prediction 212 241 - -
Tsu05g01124 913 CDD RPA1_DBD_C 536 709 IPR013955 -
Tsu05g01124 913 Pfam Zinc knuckle 868 882 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 Pfam Zinc knuckle 828 843 IPR001878 GO:0003676|GO:0008270
Tsu05g01124 913 MobiDBLite consensus disorder prediction 889 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01124 Tsu-Chr5 9842945 9846273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01124 1 812 Core DNA Replication Machinery Family AT5G45400 50.174 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01124 K07466 - gmx:100778597 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01124 05 9842945 9846273 Tsu05g01124 05 9842945 9846273 ECH