Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01112 ATGGTGAAGCATAACAATGTTATCCCAAATGAACACTTCCGTAAGCATTGGCAAAACTATGTCAAGACATGGTTCAATCAACCAGCAAGGAAAACTAGAAGACGCTTAGCTCGTCAAAAGAAGGCGGTTAAGATTTTCCCTAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATGGACAGACTCAGAAATACAACATGAAACTTAGGGCTGGCAAAGGATTTTCTCTTGAGGAGTTGAAGGCTGCTGGCATTCCCAAAAAGCTTGCACCAACTATTGGCATTTCTGTTGACCATCGCCGCAAGAACCGATCCTTAGAAGGTCTGCAAGCCAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGCGCTCGCAAGGTCAAGGCTGGTGACTCTACTCCTGAGGAACTTTCAAATGCTACACAGGTTCAAGGATCATACTTACCTATTGTGAGGGAGAAACCTACCGTAGAGCTTGTTAAGATTACAGATGAAATGAAGGCATTTAAAGCTTATTACAAGCTTCGTCTTGAACGAACAAACAAACGTCATTTGGGCGCCAGATTGAAGAGGGCTGCTGAGGCAGAGAAGGAAGACAAGAAGTGA 624 0.4487 MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELSNATQVQGSYLPIVREKPTVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01112 207 Gene3D - 167 207 - -
Tsu05g01112 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tsu05g01112 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tsu05g01112 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Tsu05g01112 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Tsu05g01112 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01112 Tsu-Chr5 9728280 9730779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01112 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 87.435 5.95e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01112 K02873 - gmx:100805957 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01112 05 9728280 9730779 Tsu04g02765 04 32114193 32120317 PCT