Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01109 ATGGCTAATGATGTTGATAATCCATTTTTTATCAAAGTTGTTGTCCTACTTATTGCCATTGGTTCAGGAGCATTAACTGTTGTTTCAGTGTACTATGTCATAGCCATTTGGTTTTGCCACCAAGAAAGAACCaacacaaatcaaaactcaccgCGGCGTGTGAGCCTCGACGGAAGCATACCTATATCAGTGGCAGACCTAATTCCAACACACAAGTACCACAAGAGAAGTAAAGTTGACGCGGTTTCAGATGACGAAGGTAGCACGTGTGTCATTTGTTTAGGAGATTTTGAGGAGGGTGAAGAGTTGAGAACAATGCCTAAGTGCTCTCATTCTTTTCATGTACCGTGTATTGACATGTGGCTCCATTTGCATTCAAGTTGCCCCATTTGTCGCACTAGTGTCGCCCCCCCTTCGCCAGCGGTGAATATCGAACACCAACTCATGATAAATACGAGACATATGGCTCCAATTGCTATCATGTAA 486 0.4156 MANDVDNPFFIKVVVLLIAIGSGALTVVSVYYVIAIWFCHQERTNTNQNSPRRVSLDGSIPISVADLIPTHKYHKRSKVDAVSDDEGSTCVICLGDFEEGEELRTMPKCSHSFHVPCIDMWLHLHSSCPICRTSVAPPSPAVNIEHQLMINTRHMAPIAIM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01109 161 SUPERFAMILY RING/U-box 75 143 - -
Tsu05g01109 161 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Tsu05g01109 161 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 3 155 - -
Tsu05g01109 161 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 155 IPR044675 -
Tsu05g01109 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 138 IPR013083 -
Tsu05g01109 161 Pfam Ring finger domain 89 132 IPR001841 -
Tsu05g01109 161 SMART ring_2 90 131 IPR001841 -
Tsu05g01109 161 CDD RING-H2_PA-TM-RING 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01109 Tsu-Chr5 9719419 9719904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01109 15 142 C3H Transcription Factor Family AT5G17600 40.000 6.35e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01109 - - gmx:102660266 155.606