Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01108 ATGGCAGATAATGATGGTGATAATCCTTTTTCTGACAAAGTTGTTATCCTACTTATTGCCATGGGTGCAGCAGCATTTGTTGTCTCAATCTACCATATCATAGCCATTTGGTTTTGCCATCAAGGAAGAACCACCACAAACCTAAATTCACCACGGCACGGTGCTGCGAGCCTCGATGAAAGCACATCCATATCGGTGGCAGACTTAATTCCAACACACAAGTATCACAAGAGAAGTAAAGTTGACGTGGTTTCAGATGACGAAGGTGGCACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAAAACTATGCCTGAGTGCTTGCATTCTTTTCATGTACCTTGTATTGACTTGTGGCTTAATTCGCATTCGAGTTGCCCCATTTGTCGCGCTAGTGCTGCCCCTTCGCCGGCAATGAATATTGAACATCAACACATGATTGATATGAGACATACGCCTCCAATTGCTATAGTGTAA 489 0.4438 MADNDGDNPFSDKVVILLIAMGAAAFVVSIYHIIAIWFCHQGRTTTNLNSPRHGAASLDESTSISVADLIPTHKYHKRSKVDVVSDDEGGTCAVCLGDFEEGEELKTMPECLHSFHVPCIDLWLNSHSSCPICRASAAPSPAMNIEHQHMIDMRHTPPIAIV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01108 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 141 IPR013083 -
Tsu05g01108 162 SUPERFAMILY RING/U-box 74 139 - -
Tsu05g01108 162 SMART ring_2 92 133 IPR001841 -
Tsu05g01108 162 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 155 - -
Tsu05g01108 162 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 155 IPR044675 -
Tsu05g01108 162 Pfam Ring finger domain 91 134 IPR001841 -
Tsu05g01108 162 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Tsu05g01108 162 CDD RING-H2_PA-TM-RING 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01108 Tsu-Chr5 9715635 9716123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01108 16 135 C3H Transcription Factor Family AT5G17600 35.659 1.17e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01108 - - aip:107639941 185.267