Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01107 ATGATCATTGATTTATGGCAAATGATGATGGTGATCCTACTTTTAATTACAACGTTATTATTGAACTTTGTTTTTTTGGCTGCagttatatttgttattaaaacatTCTACCCTTTCATAGCTGGTTGTTTTGGTCACCAAGATCAAACCGCCACCGGCCAAAACGCACCACAACCAACGTGGTATGCTGCGTCACTGAGTCTCAACGAAAGAACATTGTCATCTGTTGTACACCAAATTCCAACACACAAATACCACAAGAGAAATAAAGTTGACATGGTTTCGGATGATGAGACTGGCACGTGTGCCGTGTGCTTGGGAGATTTTGAGGAGGGGGAGGAGTTGAGGACTATGCCTGAGTGCTTTCACTCTTTTCATGTACCGTGTATTGACATGTGGCTCCATTCACATTTGAGTTGCCCTATTTGCCGCGCTAGTGCTGCCCCTTTGCCAGCAGTGAAAGAACATAGTCACATCATAGATGTTAGTCACAATATGGCTCCACTTGCTATCATGCAAAGTGAAATATGTCCACGCACAATAGATATTGCATAA 555 0.4144 MIIDLWQMMMVILLLITTLLLNFVFLAAVIFVIKTFYPFIAGCFGHQDQTATGQNAPQPTWYAASLSLNERTLSSVVHQIPTHKYHKRNKVDMVSDDETGTCAVCLGDFEEGEELRTMPECFHSFHVPCIDMWLHSHLSCPICRASAAPLPAVKEHSHIIDVSHNMAPLAIMQSEICPRTIDIA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01107 184 Pfam Ring finger domain 101 144 IPR001841 -
Tsu05g01107 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Tsu05g01107 184 SUPERFAMILY RING/U-box 83 150 - -
Tsu05g01107 184 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Tsu05g01107 184 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 176 IPR044675 -
Tsu05g01107 184 SMART ring_2 102 143 IPR001841 -
Tsu05g01107 184 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 21 176 - -
Tsu05g01107 184 CDD RING-H2_PA-TM-RING 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01107 Tsu-Chr5 9714608 9715162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01107 7 146 C3H Transcription Factor Family AT3G10910 34.043 5.02e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01107 - - aprc:113870478 130.954