Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01106 ATGgcaaatgatgatgatgatcatcCTATTTATAACAACATTATAGTCCTACTTATTGTTGTTGGTTCAGCTGCATTTGTTGTTGGCTCATTGTATCGTATCCTAGCCATTTGGTTTTGTAACCAAAGCACCACCAATGATCAAAACCTCCCGCAACCACCGCCGCGGTTTGCCTCGAACACAAACCTCGGTGAAAGCACATCCTCATCAATAGTACACCTAATTCCAACACACAAGTACCACAAGAGAAATAAAGTTGACGTTGTTTCAGATGATGGTGGTGACACGTGTGCCGTATGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAAAACTATGCCTGAGTGCTTGCACTCCTTTCATGTACCGTGTATTGACACGTGGCTCCATTCACATTCGAGTTGCCCCATTTGTCGTGCCAGTGCCAGTGGCGCCCCTTCCCCGGCGGTGAATGAACAACATCACAGGATAGATGTGAGTCATAATATGGTTCCACTTGCTATCATGCAAAGTGGATTGGTGAGATGGTGA 531 0.4388 MANDDDDHPIYNNIIVLLIVVGSAAFVVGSLYRILAIWFCNQSTTNDQNLPQPPPRFASNTNLGESTSSSIVHLIPTHKYHKRNKVDVVSDDGGDTCAVCLGDFEEGEELKTMPECLHSFHVPCIDTWLHSHSSCPICRASASGAPSPAVNEQHHRIDVSHNMVPLAIMQSGLVRW 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01106 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 144 IPR013083 -
Tsu05g01106 176 SUPERFAMILY RING/U-box 77 142 - -
Tsu05g01106 176 Pfam Ring finger domain 95 139 IPR001841 -
Tsu05g01106 176 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 176 - -
Tsu05g01106 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 176 IPR044675 -
Tsu05g01106 176 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Tsu05g01106 176 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01106 Tsu-Chr5 9711805 9712335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01106 16 150 C3H Transcription Factor Family AT5G17600 35.616 4.62e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01106 - - aprc:113870478 174.096