Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01104 ATGGGATATGACTCGGATAGCGCCTCGCAAGATGGGAGAGATGAAGatgatgaagaagaatatgaGGAGTCTGACAAGGGTAATCGTTTTCTCGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTGGCTGACAAGCTGGGTCCATCGCTGACAGATATAGATTTGTCAGGAAAATCACCACGAACACCACATGGCATTGTTGAACAAGACTGCGGTGAAAAGGCTGAAGATGCTGTTGATTACGAAGATATTGATGAAGAGTATGATGGTCCAGAGACTGAAACTGCGAATGAAGAGGACTATTTATTGCCAACAAAGGATTTTTTTGCTGTTGAAGCCTCTCTTGAAGCTTTGGAGCGCAAAACTTCTGTCTTCGACGATGAAGATTATGATGTAGAATCTGACAAGGAAGAAGACATTGTGAATAATGATGCTAAAGTCGATAACATCTCTTTAGCTgAGCACGAGGAGAGCTTTGTAGATGCATCTAAAGGAGGGAGTGCTCTTGAGCATGGTTTACAAGTTGGCTCACTGCAGACTGAAGAATTGGACAGTAATGTACAAAAACCTGAGGAAGGACCTGAAGTTTTAAAAAGGTCTATGGCTACACCATTGCCTGTATTGTACGTGGACGATGGAAAAGCAGTTTTGCGCTTCTCTGAAATTTTTGGTATTCAGGAACCTCCCCGAAAGGGAGAGAAGAAAGAGCGTCGACATTCCACTCCTagagATAGATACAAGTCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAGTTCCTTAAAAGCTTCTCTCAAAGTCTCACACTTAGTAAACAGGTTTGTGTAGTACATACTGATGTATCAGAAAACAATAATGTTGAATTGGAATTTCCAaaatttggatttcttcacGGAGATGCCTCACCTAATGTTAAAGATGACCGGCAATCAAAGGACTCTTGTCTTGGTGGTGAACCAATGAAAGGCGATTTTGCAGATGATCTTTCTTGGAAAGATCATCCCCTCATGTTAGCCAATTTTTATCCTCTTGATCAGCGAGACTGGGAAGATGAAATCCTTTGGGGCAACTCTCCTGTTGCAAGCGATACTGATAATAATGTTGAGAGCTGTGAAATTTCTGGAATTGAATTGAGAGCTTCTGGCGGTGGTGAAACTGAAATTGAAAGCGGGATACAGAATCTTCAGTCAGATCCCCATAAGATAGTAGAGGAGAAAGATCATAGTGTATTCACATGCTACTCTCCTGTTTCATTGGATCCCTTTGGCTCAAGGGATTCTAATGGGGCTGAAACAACATCAGAAAGTCTATTTCATCCCCAACTTCTGAGGCTAGAAGTGGACAGTTCTCATATTGCAGATGGAAGAGGTGCAGATATATCTGAGAGGCATAATCAAAGTGGTCAAGTAAAGCGATTGACCATGGTTATGTCACAAAACAGAGACCTCATGGATGACTCGTGGATCGACAAGATAATGTGGGAGGATCTTGGCAGGCCTAAGATGAAACCAAAGCTTATATTTGATCTTCAGGATAATCAAATGCACTTTGAGGTCTTGGATAGCAAGGACAGTACCCATCTTCGCCTTCATGCCGGGGCTATGATTTTAAGTCGCTCTTTGAAATCCATTAGTGCGGACTCTTCTGAGATACCGGGACATGGAGGTCAATTTGGATGGAGATATGTTGCTAATGACAAACACTATTCAAATCGgaaaacttctcagcaactgaaatcaaactcaaaaaaaCGCTCAGCTCATGGTGTCAAAATTTTTCACTCGCAACCTGCACTGAAACTACAGACCATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAGAGCACTATGGTATCCCCATGACAACGAGGTGGCTGTTAAACAACAAGGGAAATTACCAACACAAGGATCCATGAAAATTATTATGAAAAGCTTGGGTGGCAAAGGGTGTAAACTGCATGTTGGTGCTGAAGAAACTCTTTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGaTTTCAAGGCAACAGAAAcggtgaaaatattttatttgggtAGGGAGCTTGAAGATCACATATCATTAGTTGCACAAAATGTTCAGCCAAATTCCTTGTTACATCTTGTCCGTACAAAGATACATTTATGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCGGGAGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGACATGTTTTTCTAATGGAGTATTGTGAAGAAAGGCCTTTACTTCTGAGCAATGTTGGGATGGGTGCAAGACTTTGTACATATTATCAAAAAAGTTCACCGGATGACCAATCTGGCTCCTTATTACGGAATACAGATAGTAGTTTGGGGCATATTATTTCTCTGGACCCTGCCGATAAATCTCCTTTTCTCGGTGATTTAAAACCTGGTAGCAGTCAGTCATCACTTGAGACCAATATGTATAGAGCACCCATATTTACTCATAAAGTTCCACCAACTGACTACCTGCTGGTTCGTTCGCCAAAGGGAAAACTATCATTAAGGCGCATTGATAAAGTTAATGTTGTCGGACAGCAGGAACCTCTCATGGAGGTGTTCTCGCCTGGAAGTAAGAATCTTCAAACTTTCATGATGAACAGACTATTGGTACACATGTGCCGTGAATTCCAAGCTGCAGAGAAGCAGCACTTGTCTCCACACATTCGCATTGACGACTTTCTTCCGCAGTTTCCTTTCCTATCAGAAGCCTCATTTCGTAAAAGGATCAAGGAATATGCTAATTTACAGAGGGGTGCAAACGGACAGTCAATTTATGTTAAAAAGCGAAATTTCCGCATGTGGTCCGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTCTGTGCTTTTGAAAGCATGCAAGCTGGTCTCTACCGCTTAAAACATTTAGGAATTACTGAAACACATCCTAACAATATTTCATCTGCAATGAATCGGCTtcctgatgaagcactagcacTAGCTGCTGCGTCACATATTGAGAGGGAATTGCAAATTACTCCATGGAACTTGAGTAGCAATTTTGTTGCCTGTACTAGCCAGGGTAAGGAAAATATTGAGCGGATGGAAATTACTGGTGTTGGTGATCCATCAGGTCGTGGCTTGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCGGTGTCTAGTGCAATGGTGAAGAAGAAAGTAGCTGCTAGCAGGGGAGGTTCCACTGTTACCGGTACTGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGTGAGGTACTTCTGAAGTTCAATGTTCCTGAGGAAGCCATTGCAAATCAAACCAGATGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATAGGAAAATATGCTCGTGGTCAGCGAATGTCCTTTCTTCAGTTGCAGCAGCAGACCAGAGAGAAGTGCCAGGAGATCTGGGATAAACAACTTCAGAGTTTGTCAGCTTTAAATGGTGATGATAATGAGAGTGATTCAGAAGGGAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTGCTCGATGCTGAGGAATTTGAAGATGGAGAAGAAGGTACTAATGACTTAAAACGGGATAAGGGAGATGGTGTTAAGGGTCTTAGAATGAGAAGACGCACAACCTTGGCCCAGGCAGAggaggaaattgaagatgaagaagctGAGGCCGCTGAATTACGCAGGTTGCTTATGGATGATGATGAAGCTTACcggaagaaaaagaagaaagccAGGGTTATGGTGGATGCAAGAAGATTGATACCAAAGCCGCAACCAAAATTTGTCTTTGACAGCACTGAACAAgtaaagaaaataacaaatacATTGCAACTGGATGGAACTAATCATTTTAAGGAGAATTCAATTACAGATCATAGGGGGGAGGAAAATTTTTCTGCTAAAAAAAGCAAATCCGTGAAGGTCAATAAAGCAAAGAAGAATGACATTTCGCCTATTAGTCTACCaaataaaaaactcaaattaaatATGGGAGAAGGAATCAAGAACCAGGTATTTAAGGAGAAAAAACCATCACGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACGAACAAGAATTGTCCGAAATATGGTGAAGATCTAGAAGCACAACTTGAACCTACAGACATGGAAAAACCAACTGGAAAATCCAGCTCTGTTGATCCCTCTAGCCAGTCCCAGCATAAACTCCCCTCCAAAAAGTCAATATCAAAAATCGTAACAAAAATTGCTCCAGTTGAAAGTGCAACTAAAATTCCATTGAAGTTCAAATGCAGTTCGACGGAGAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTACCAAGTCTGCTAAGATTAGTAAGATAATTATTCCAAACAAAGTGAAATCAGAGGATACACAGGCCGAATCTCTTAAGCATGCTATTGTTATACGTCCTCCTACTGATCCAGGTAGAAGTCAGGTTGATTCTCATAAGTTTCCAATTAAAATCCGCCCGCCTGCAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAACGTACAAAGGATGTTGCTGATCTGGAACTTGACAGTCCTGGTGGGAACACAGGAATTGAACacagaaaaactaaaagaattGTGGAATTGACGAGTTTTGAGAAACACAGAAAGCAGGAAACCATGTATTCATCTGAAGGTTTGGCAAAATGGAATGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAAAAACGAAGAAATGAAGTGAGACTCAGAGAAGAAAAAGCAAGGAGGTATCACAAAGAAGAAATGAGGATGCTCAAGGAACAAGAAAGATTAGAtgagttaaaaaaatatgaagaagatattagaagagagagagaagaggaagaacgGCAAAAAgctaagaagaaaaagaaaaagagaaagcCCGATTTAAGAGATGATTATTTAGATGATCCTAGGGAACGAAGATATGGCAAGAggatgcaagaaagagaaaggAGTGGTAAAAGGAGATCCGTTGTTGAATTAGGAAAGATTAGTGGAGATTTTATGCCGCCAGCAAAACGCCGAAGAGGGGGAGGAGGAGAGGTTGGGCTGGCAAATATCTTGGAGAGTATTGTGGATACCATTGTGAAAGACAGGGCCGATCtgtcttttctttttgtgaaaCCAGTGTCCAAGAAAGATGCCCCTGACTATCTGGATATCATAGAGAGGCCTATGGATCTTTCCAGAATAAGGGAGAGGGTACGGAATATGGAGTACAAGAGCCGTGAAGACTTCAGACATGATGTCTGGCAAATTACTTTTAATGCACATAAATATAACGATGGGCGAAATCCTGGAATTCCTCCAATTGCGGATATGCTTTTGGAATATTGTGATTCTTTGTTGAATGAGAATGATGAGAATCTCACTGCTGCTGAAGCTGGTATTGAAACTAAAGATTTCTAA 5658 0.3934 MGYDSDSASQDGRDEDDEEEYEESDKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPRTPHGIVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEDYLLPTKDFFAVEASLEALERKTSVFDDEDYDVESDKEEDIVNNDAKVDNISLAEHEESFVDASKGGSALEHGLQVGSLQTEELDSNVQKPEEGPEVLKRSMATPLPVLYVDDGKAVLRFSEIFGIQEPPRKGEKKERRHSTPRDRYKSLDLSDDIVEEDEEEFLKSFSQSLTLSKQVCVVHTDVSENNNVELEFPKFGFLHGDASPNVKDDRQSKDSCLGGEPMKGDFADDLSWKDHPLMLANFYPLDQRDWEDEILWGNSPVASDTDNNVESCEISGIELRASGGGETEIESGIQNLQSDPHKIVEEKDHSVFTCYSPVSLDPFGSRDSNGAETTSESLFHPQLLRLEVDSSHIADGRGADISERHNQSGQVKRLTMVMSQNRDLMDDSWIDKIMWEDLGRPKMKPKLIFDLQDNQMHFEVLDSKDSTHLRLHAGAMILSRSLKSISADSSEIPGHGGQFGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKQQGKLPTQGSMKIIMKSLGGKGCKLHVGAEETLSSVKAKASKKLDFKATETVKIFYLGRELEDHISLVAQNVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPDDQSGSLLRNTDSSLGHIISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPTDYLLVRSPKGKLSLRRIDKVNVVGQQEPLMEVFSPGSKNLQTFMMNRLLVHMCREFQAAEKQHLSPHIRIDDFLPQFPFLSEASFRKRIKEYANLQRGANGQSIYVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISSAMNRLPDEALALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAMVKKKVAASRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEAIANQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQLQQQTREKCQEIWDKQLQSLSALNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEDGEEGTNDLKRDKGDGVKGLRMRRRTTLAQAEEEIEDEEAEAAELRRLLMDDDEAYRKKKKKARVMVDARRLIPKPQPKFVFDSTEQVKKITNTLQLDGTNHFKENSITDHRGEENFSAKKSKSVKVNKAKKNDISPISLPNKKLKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLEPTDMEKPTGKSSSVDPSSQSQHKLPSKKSISKIVTKIAPVESATKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETTKSAKISKIIIPNKVKSEDTQAESLKHAIVIRPPTDPGRSQVDSHKFPIKIRPPAEIDREQSHKKIVIKRTKDVADLELDSPGGNTGIEHRKTKRIVELTSFEKHRKQETMYSSEGLAKWNAKEDRRWWEEQEKRRNEVRLREEKARRYHKEEMRMLKEQERLDELKKYEEDIRREREEEERQKAKKKKKKRKPDLRDDYLDDPRERRYGKRMQERERSGKRRSVVELGKISGDFMPPAKRRRGGGGEVGLANILESIVDTIVKDRADLSFLFVKPVSKKDAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPIADMLLEYCDSLLNENDENLTAAEAGIETKDF 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1488 1521 - -
Tsu05g01104 1885 Gene3D - 1761 1884 IPR036427 GO:0005515
Tsu05g01104 1885 Pfam TATA box-binding protein binding 19 61 IPR009067 -
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1559 1580 - -
Tsu05g01104 1885 Coils Coil 1260 1294 - -
Tsu05g01104 1885 SMART bromo_6 1760 1871 IPR001487 GO:0005515
Tsu05g01104 1885 SUPERFAMILY Ubiquitin-like 635 735 IPR029071 -
Tsu05g01104 1885 Gene3D - 647 737 - -
Tsu05g01104 1885 PANTHER BNAA01G26290D PROTEIN 1355 1880 - -
Tsu05g01104 1885 PANTHER BNAA01G26290D PROTEIN 15 1329 - -
Tsu05g01104 1885 Coils Coil 1672 1709 - -
Tsu05g01104 1885 ProSiteProfiles Bromodomain profile. 1781 1851 IPR001487 GO:0005515
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1690 1739 - -
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1710 1739 - -
Tsu05g01104 1885 CDD Ubl_TAFs_like 665 736 - -
Tsu05g01104 1885 Pfam Bromodomain 1772 1847 IPR001487 GO:0005515
Tsu05g01104 1885 CDD Bromodomain 1770 1866 - -
Tsu05g01104 1885 ProSitePatterns Bromodomain signature. 1786 1843 IPR018359 -
Tsu05g01104 1885 Gene3D - 22 68 IPR036741 -
Tsu05g01104 1885 SMART ubq_7 665 737 IPR000626 GO:0005515
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 67 93 - -
Tsu05g01104 1885 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1355 1880 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Tsu05g01104 1885 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1329 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Tsu05g01104 1885 SUPERFAMILY Bromodomain 1753 1872 IPR036427 GO:0005515
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1544 1580 - -
Tsu05g01104 1885 ProSiteProfiles Ubiquitin domain profile. 665 735 IPR000626 GO:0005515
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1439 1466 - -
Tsu05g01104 1885 Pfam Protein of unknown function (DUF3591) 585 1151 IPR022591 -
Tsu05g01104 1885 PRINTS Bromodomain signature 1784 1797 IPR001487 GO:0005515
Tsu05g01104 1885 PRINTS Bromodomain signature 1832 1851 IPR001487 GO:0005515
Tsu05g01104 1885 PRINTS Bromodomain signature 1798 1814 IPR001487 GO:0005515
Tsu05g01104 1885 PRINTS Bromodomain signature 1814 1832 IPR001487 GO:0005515
Tsu05g01104 1885 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Tsu05g01104 1885 Pfam Zinc knuckle 1409 1428 IPR041670 -
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1441 1464 - -
Tsu05g01104 1885 Pfam Ubiquitin family 669 737 IPR000626 GO:0005515
Tsu05g01104 1885 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01104 665 735 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 8.62e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01104 K03125 - gmx:100780733 3019.18