Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01098 ATGGAGGAGAACTACGAGGTTATAGAAGAACTTCACAACGTCGAAGCCGAGATAGAAGATGTTCAAGAACAAATTAGGGCGTTAATTGAAAAGCAAGAGATGTTGTATGAGAGAAAATCTGAGTTGAATGCTATTCTGGAAGCTTGTAAAGAATCTGAAAATCAAGTTAATAATGCAAGTTCAAGTACTGTGGAGAATTGGAATGGACCATTTCAATGGGATTCTCAAGCTGATGATCTTAGATTAAACATTTTTGGTATTGCATCTTACCGTGCAAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTTCTGGTGATAATGGCAGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAGTTGCTCTAGTTGTCAGTCCTTTGCTTTCGTTAATACAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCACACATGTTAACTTCAACAACAAGTAAGGACAACGAGAAGTTCATATACAAGGCTTTGGAGAAGGGCGAGGGGGAActcaaaatattatatgttaCTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTTTCTCTCTAATTTCAATTGATGAGGCACATTGCTGCAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCGTTGACTgCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAATAGgccaaatttattttatatgGTAAAGGAAAAGTCATCCGTCAGTAAGGTGGTCATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATCATGAATCAGGAATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCCGGTCGAGATGGGCTTCCCTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTTTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTGCGATATTGTCAGTCCAAAAGACAATGCCGACGGAGTGCCTTTTTCCGGCATTTTGCTGAGCCATTACAAGAGTGCAACGGGATGTGCGACATATGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTcgagaaaatgaaaacaaaacagAAGGAAATAGGTTCTGACTTAAAACGTGAGGAAATGGAGCAGCTTATCTTACACCTTTTACTGGAGCGTGTTTTGAAAGAAGAATTCCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTAGGGCCACTGGCGAAGCAAATTTTGCAAGGGAAGAAGACTGTGAAGCTTGAGGTTTCTACAGAAGAGAAAACTAAAGCTTCTGCAAGATTGAAACGTGGCCTTGGTTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTGGAAGAGTTGGAGAAAGTAATTGGAAAATTGAAGACCGAAAAGTATGGAAATAAGATTCTTGAGCAGATTGTAAAATATTCTGATTTCAAGCCGACTGGTGAACAAGTAAGTGATGGTAGAGCCGCAAAAAAGTCGAAAACCAAGAAGAACGTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2109 0.3978 MEENYEVIEELHNVEAEIEDVQEQIRALIEKQEMLYERKSELNAILEACKESENQVNNASSSTVENWNGPFQWDSQADDLRLNIFGIASYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGVALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRFSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVIDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERVLKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEVSTEEKTKASARLKRGLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEELEKVIGKLKTEKYGNKILEQIVKYSDFKPTGEQVSDGRAAKKSKTKKNVVLIESSEDEA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01098 702 Gene3D - 281 477 IPR027417 -
Tsu05g01098 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Tsu05g01098 702 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Tsu05g01098 702 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Tsu05g01098 702 SMART helicmild6 327 408 IPR001650 -
Tsu05g01098 702 PANTHER ATP-DEPENDENT DNA HELICASE Q1 9 681 - -
Tsu05g01098 702 Pfam Helicase conserved C-terminal domain 304 407 IPR001650 -
Tsu05g01098 702 Gene3D - 44 280 IPR027417 -
Tsu05g01098 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Tsu05g01098 702 CDD DEXHc_RecQ1 73 280 - -
Tsu05g01098 702 SUPERFAMILY HRDC-like 604 670 IPR010997 GO:0000166|GO:0044237
Tsu05g01098 702 Pfam RQC domain 482 586 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tsu05g01098 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 9 681 - -
Tsu05g01098 702 Coils Coil 4 38 - -
Tsu05g01098 702 SMART ultradead3 86 289 IPR014001 -
Tsu05g01098 702 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 83 506 IPR004589 GO:0004386|GO:0006310
Tsu05g01098 702 CDD SF2_C_RecQ 281 417 - -
Tsu05g01098 702 ProSiteProfiles Pumilio RNA-binding repeat profile. 643 679 IPR001313 GO:0003723
Tsu05g01098 702 Pfam RecQ zinc-binding 420 476 IPR032284 -
Tsu05g01098 702 SMART RQC_2 485 582 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tsu05g01098 702 Coils Coil 695 702 - -
Tsu05g01098 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Tsu05g01098 702 Gene3D HRDC domain 599 667 IPR044876 -
Tsu05g01098 702 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Tsu05g01098 702 Gene3D - 481 582 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01098 Tsu-Chr5 9585125 9596439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01098 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.547 1.53e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01098 K10899 - gmx:100817635 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01098 05 9585125 9596439 Tsu05g01098 05 9585125 9596439 ECH