Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01090 ATGTATGCAAAATATGGTAACTTGAATATTGCAAAGAGACATTTTCAACAAAATACCAAAGAGAAACATTGTTGCTCAGAACTAATCAAGAATCAAGATGTCTATGAGAATCACTTGTTTGGTGATATTCCTAAGACTATTGGTGAATGCACAATTTTAGAATACCTTCAATTGCAAGGGAACTCCTTCTCTGGAACAATACCATCTTCGTTGGCTTCTCTCAAAGCTAAAGAGGATTCAAGAAATGTCGATTCCAAGGATGTAGAAATGATTGAGGCTGAAGACAATGAAGCGGACACAATCTATCCTTTGAGACCTTCTTGGCGACCATATGAACTCGATGAAAGATGTGAAGAGGTCAGGTTGAAACCCGATAGTTCAGAAGCAGAGGTTGATTTATCAGTTGATTTTGAGTCAAGTAATATTGATAGCGACGTGTCCAAAAAACTCAAGTATACGAAGCAGTTGCACCTTCATTCAATTCACGCAGTTGTGCAGCTCCGACCATCACAGCATTATCTCGATTCTGGTGGCTCAGAAAAGAAGAATGTTGCTATGTCAAATCAGAATAATCCGATGAAGCCTTCAACGAGTAATGGTGATCAGGTATTACAGTTGTTAAAACAGTATGATTACATTGCTACACTTTGTCCTGGAGTAAGCCGCGAAACATTGGACTTTAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAATTGGTCATTCATTGTGATCTTAAGCCAAGCAATGTCCTTCTTGATAATGACATGATTGCTCATGTGAGTGATTTTGGCATAGCAAGACTCGTCTCAGTCATTGACGGCACATCTCATAAATATACCAGTACAATTGGAATAAAAGGAACTATTGACTATGCTCCTCCAGTATGGGATGTGTTCAGAAGTGTCCACATGTGGTGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAAAAGACCCACTGATAAAGCTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGTAAATTCATTTCCTGATAATCTTATAAAGATTTTGGATCCAAATATTGTATCAAGAGATGTAGAAAACAATGAGATTCTTATTCCAAGTGCAGGAGAGTgcttaatttcactttttaagatTGGACTTGTTTGTTCAATGGAATCACCgaaagaaagaatgaatattGTGGATGTTAATAGAGAGCTTATCATAATCAAAAAGGCTTTTCTCGCCGGTGAGATAAACTGA 1284 0.3637 MYAKYGNLNIAKRHFQQNTKEKHCCSELIKNQDVYENHLFGDIPKTIGECTILEYLQLQGNSFSGTIPSSLASLKAKEDSRNVDSKDVEMIEAEDNEADTIYPLRPSWRPYELDERCEEVRLKPDSSEAEVDLSVDFESSNIDSDVSKKLKYTKQLHLHSIHAVVQLRPSQHYLDSGGSEKKNVAMSNQNNPMKPSTSNGDQVLQLLKQYDYIATLCPGVSRETLDFSHRLNIIIDVASALHYLHHECEQLVIHCDLKPSNVLLDNDMIAHVSDFGIARLVSVIDGTSHKYTSTIGIKGTIDYAPPVWDVFRSVHMWCDMYSFGILMLEMLTGKRPTDKAFEDGQNLHNFVVNSFPDNLIKILDPNIVSRDVENNEILIPSAGECLISLFKIGLVCSMESPKERMNIVDVNRELIIIKKAFLAGEIN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01090 427 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 30 76 - -
Tsu05g01090 427 Gene3D Transferase(Phosphotransferase) domain 1 211 422 - -
Tsu05g01090 427 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 221 424 - -
Tsu05g01090 427 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 30 76 - -
Tsu05g01090 427 Gene3D Ribonuclease Inhibitor 7 86 IPR032675 -
Tsu05g01090 427 SMART serkin_6 111 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01090 427 ProSiteProfiles Protein kinase domain profile. 53 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01090 427 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 221 424 - -
Tsu05g01090 427 Pfam Protein kinase domain 227 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01090 427 MobiDBLite consensus disorder prediction 175 199 - -
Tsu05g01090 427 SUPERFAMILY Protein kinase-like (PK-like) 216 416 IPR011009 -
Tsu05g01090 427 SUPERFAMILY L domain-like 35 74 - -
Tsu05g01090 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Tsu05g01090 427 Pfam RPC5 protein 154 191 IPR006886 GO:0005634|GO:0006351
Tsu05g01090 427 Pfam RPC5 protein 102 152 IPR006886 GO:0005634|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01090 Tsu-Chr5 9535133 9538357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01090 223 422 Receptor kinase-like Gene Family AT3G47570 44.776 7.71e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01090 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01090 - - mtr:MTR_5g025930 290.041