Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01089 ATGGAACTAGGAAACCAAACAGATCATTTGGCTTTGCTCCAATTCAAGCAACTAATATCTAATGATCCGTATGGTATCCTAGATTCTTGGAATAGTTCAACTCACTTTTGCAACTGGCATGGAATCATATGCAGTCCCAAGCATCAAAGGGTTACTAAGTTGAAGTTGGAAGGATACAAGTTGCATGGATCCATATCTCCATATGTTGGTAATCTCTCTCATATCAGATTTCTTAACCTTGCAAACAACACCTTATATGGTAACATTCCACAAGAATTGGGTCGTTTGTCAAGATTAAGGTATCTCCTTTTGGACAACAACTTGTTGGCCGGAGAATTTCCTATAAACTTGACAAAGTGCTCAGAACTCAAAACCATGCGCTTAGATGGAAACAAACTGATTGCTAAAATACCTAGCCAAATTGGTTCTCTTCAAAAGCTTCAAATCTTTAGCATAGCACAAAACAATTTATCCGGAAAAATCCCACCATCCATAAGGAATCTTTCATCCCTTACTATATATTTTGTGGGTGACAATAACTTGGTGGGAAATATTCCACAAGAAACATGCTTCCTAAAACAGTTGAAGGTTATAGAAGTTTATGTCAACAAATTGTCGGGTACATTTCCTTCTTGTCTTTATAATATGTCGTCTCTTAATGTAATTTCAGTTGTTGAGAATAACTTTAGTGGCTCTCTTCCATCCAATATGTTCCACACTCTTCCCAatctccaatttttttcaattggaGGAAATAATTTCTCAGGTCATATACCCACTTCCATTGCAAATGCTTCTACTTTAACAGTACTTGCGATTTCAATAAACCATTTTGTCGGACAAGTTCCAAATCTAGGTAAGCTACAAAGTCTGATAATGCTAAAATTGGGTCACAACAATTTAGGAGACAATTCCACAAATGATTTAGAGTTTTTAAACTCATTGACAAATTGTAGTAAGTTGCAAACACTCTCTTTAGCCATTAATAATTTTGGAGGTAGTTTGCAAAATTCTATAGGTAATTTGTCCACCACACTTGATCAATTATCTTTAGGGGGTAATCAAATATATGGACAAATTCCTACAGAATTAGGAAATCTAATTAGCTTGAGTCTCTTGACCATGGAACAGAACAATTTCGAAGGAACAATTCCAACTACTTTTGGAAAgtttcaaaagattcaaatgTTAAGATTGATCGAAAACCATTTATCAGGGGTTATACCATCTTTCATAGGCAACCTCAGTCAATTGTATTCTTTGAGTCTAGATGGAAATAGGTTTGAAGGTAATCTTCCTCCAAATATTGGAAATTGTCAAAAGTTACAATACTTAACTGTTTCGCAAAACAACCTCAAAGGAGTTATACCCTTAGAGATTTTCAACATTTCGTCATTATCGAACATACTAGACTTGTCACTTAACTCAATGAGTGGTAGTTTACCAAAAGAAGCGGGTATgctaaaaaatattgattggCTAGATGTTTCTGAGAATAATTTGTCGGGGGACATTCCTGGAACTATTGGTGAATGCATAAGTTTAGAATATCTTTATTTAGAAGGGAACTCCTTTAAAGGAACCATACCATCCTCTTTGGCATCGCTCAAAGGTCTTCAACAGTTAGATCTGTCTAGAAATCAATTGACTGGATCAATTCCAAAAAACTTGCAAAATATTGCTTTCCTAGAATATTTCAATGTTTCTTTCAACATGTTGGAAGGTGAAGTACCAATAGATGGCGTATTTGGAAATGCAACTCAAGTAGCAATTATTGGAAACAATAAGCTTTGTGGGGGTATTTCACAGCTGCATCTACCACCATGCCTTATAATCAAGGGTAgaaaacatacaaaacaccataAATACAGGTTGATAGTTGTGATTGTTGGGGtggtttcttttcttctcatacTTTCATTTATGATAACTATGTATTGGATGAGGAAAAGAAATCTAAAACGAAATTTTGATTCACCAACAATTGATCAACTAGCTAAGGTTTCATACCAAGACTTACATCGAGGAACAGATGGTTTCTCACATAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAACCTTGAGTCAGAAGATAATGTTGTTGCTGTGAAGGTCCTTAACCTCCAAAAGAAGGGAGCTCGCAAGAGTTTCTTTGTTGAATGTAATGCACTCAGAAACATTAGACACCGAAATTTAGTTAAGGTTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTAAGATTTTAAATGCAGAGACTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAATTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGACGAAGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCCAGACTTGTCTCAGCCATTTGTGGCAATACTAGTACAATTGGAATCAAAGGTAGTGTTGGCTATGCTCCTTCAGAGTATGGAATGGGTTCTGAAGTGTCCACGTGTGGTGATATGTATAGCTTTGGAATCCTTATGTTGGAGATGCTTACCAACAGAAGACCCACTGATGAAGTTTTCAAAGATGGTCAAAATCTGCATAACTTTGTTGTAAATTCATTTCCTGATAATCTTGGAAATATTTTTTACCCACATCTTGTATCAAGAGACGCAGAAGTGGCAGAAGATGgaaacaatgaaaatctgaTTCCGACTACAAAGGAGTGcttagtttcactttttagGATTGGACTTATTTGTTCAATGGAATCACCGAAGGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAACATAATCAGAAAGACCTTTCTCACCGGTGAGATAAACTGA 2964 0.3458 MELGNQTDHLALLQFKQLISNDPYGILDSWNSSTHFCNWHGIICSPKHQRVTKLKLEGYKLHGSISPYVGNLSHIRFLNLANNTLYGNIPQELGRLSRLRYLLLDNNLLAGEFPINLTKCSELKTMRLDGNKLIAKIPSQIGSLQKLQIFSIAQNNLSGKIPPSIRNLSSLTIYFVGDNNLVGNIPQETCFLKQLKVIEVYVNKLSGTFPSCLYNMSSLNVISVVENNFSGSLPSNMFHTLPNLQFFSIGGNNFSGHIPTSIANASTLTVLAISINHFVGQVPNLGKLQSLIMLKLGHNNLGDNSTNDLEFLNSLTNCSKLQTLSLAINNFGGSLQNSIGNLSTTLDQLSLGGNQIYGQIPTELGNLISLSLLTMEQNNFEGTIPTTFGKFQKIQMLRLIENHLSGVIPSFIGNLSQLYSLSLDGNRFEGNLPPNIGNCQKLQYLTVSQNNLKGVIPLEIFNISSLSNILDLSLNSMSGSLPKEAGMLKNIDWLDVSENNLSGDIPGTIGECISLEYLYLEGNSFKGTIPSSLASLKGLQQLDLSRNQLTGSIPKNLQNIAFLEYFNVSFNMLEGEVPIDGVFGNATQVAIIGNNKLCGGISQLHLPPCLIIKGRKHTKHHKYRLIVVIVGVVSFLLILSFMITMYWMRKRNLKRNFDSPTIDQLAKVSYQDLHRGTDGFSHRNLIGSGSFGSVYKGNLESEDNVVAVKVLNLQKKGARKSFFVECNALRNIRHRNLVKVLTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPKILNAETPTTLDLSHRLNIIIDVASALHYLHQECEQLVIHCDLKPSNVLLDEDMVAHVSDFGIARLVSAICGNTSTIGIKGSVGYAPSEYGMGSEVSTCGDMYSFGILMLEMLTNRRPTDEVFKDGQNLHNFVVNSFPDNLGNIFYPHLVSRDAEVAEDGNNENLIPTTKECLVSLFRIGLICSMESPKERMNIVDVTRELNIIRKTFLTGEIN 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01089 987 Gene3D Phosphorylase Kinase; domain 1 661 761 - -
Tsu05g01089 987 SUPERFAMILY Protein kinase-like (PK-like) 657 974 IPR011009 -
Tsu05g01089 987 Gene3D Ribonuclease Inhibitor 4 154 IPR032675 -
Tsu05g01089 987 Pfam Leucine rich repeat N-terminal domain 6 45 IPR013210 -
Tsu05g01089 987 SUPERFAMILY L domain-like 6 301 - -
Tsu05g01089 987 ProSiteProfiles Protein kinase domain profile. 680 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01089 987 Gene3D Ribonuclease Inhibitor 307 614 IPR032675 -
Tsu05g01089 987 SUPERFAMILY L domain-like 345 599 - -
Tsu05g01089 987 Pfam Protein tyrosine and serine/threonine kinase 684 973 IPR001245 GO:0004672|GO:0006468
Tsu05g01089 987 PANTHER LRR RECEPTOR-LIKE KINASE 3 983 - -
Tsu05g01089 987 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Tsu05g01089 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Tsu05g01089 987 PANTHER OS04G0122200 PROTEIN 3 983 - -
Tsu05g01089 987 Gene3D Transferase(Phosphotransferase) domain 1 762 983 - -
Tsu05g01089 987 Gene3D Ribonuclease Inhibitor 155 301 IPR032675 -
Tsu05g01089 987 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Tsu05g01089 987 SMART serkin_6 680 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01089 Tsu-Chr5 9531233 9534292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01089 5 982 Receptor kinase-like Gene Family AT3G47570 46.177 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01089 PK_Tyr_Ser-Thr 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01089 - - mtr:MTR_5g025930 1448.72