Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01078 atgtcacataTTCTCAATGAAGTTGTAGCcacaaaatatgaaaaatttgaaGTCAAGTTCATTAAGAAAAGTGTTATAAAAGCTCTCAATCATTTCCCAAAGCCATTTTCAGTGATTAATCTCTCGAATCTTGATCTACTTTCAGGTCGTTTTCCTGTTACATACTTATATTTCtacaaaaaaccaaaactaGGTAACttcaaatcttttattaacactCTTAAAACCTCTTTAGCTCAAACACTTAATCATTACTATCCATTTTCTGGCCAAATTGTTCAAAATCACAAAACCAATGAACCTGAAATCATTTGTGACAACAATGGTTCATTACTCATTGAAGCTCAAATAAATATTCCACTAAAgaatttagatttttataatCTCAATGAAACTCTTGAAGATAAAATTGTCTCGGTTCAACCGAATTTCCCTTCACAAATTCAGGTAACAGAATTCATTTGTGGTGGAATTTCAATAGCATTTACATTTGATCATGCATTAGGTGATGCAACTTCATTTGGTAAATTCATTTCAACATGGTGTGAAATATCACAAAATAAACCGATATCATGCATACCGAATCATACAAGAAACCTTCGCGCACGTTCGCCTCCTAAATACCAACCTTATTTAGATCAAATTTTCATCAAATGTACCATAGAAGATATACAAAACATGAAAATGAATAACAATATTTCGCTTAAGCGTCTTTATCATATCGATGCATCGAGTATTAACATGCTGCAGAGACTTGCTTCGGTTAATGGAACCAAGAGAACAAAGATTGAAGCTTTCTCTGCTTATGTATGGAAGATAATGATAAACACATTTGATCAAAGTAAGTATAAAAAATGCAAGATGGGTTGGTTAGTagatggaagagaaagaatgagCGGAAGCGAAAAACCAATGTCGAATTACATTGGTAATGTATTGTCTTTGGCGTTTGGTTCGGCGAAAATtcaagaattgaaagaaggttCATTATCAAACATAAGTGAAATTGTACATGATGCAATTTCTAAGGTTAGTAATGAGGAAcattttttggatttgattgaTTGGATTGAGTTTCACAGGCCGGGTTTGATGCTTGCAAAGGCGGTATTAGGACAAGATGATGGACCTGTCTTGGTGGTTTCTTCAGGACAAAGGTTTCCTGTTAGTGAAGTTGATTTAGGATTTGGGAGTCCTTTGTTAGGGACAGTGTATACTTCTATTGAAAGGGTTGGTGTTGGTTATATGAATCAAAGGAAGAGTGGTAAAGGTGATGGTTCATGGACTGTTTCTGCTATCTTGTGGCCTGAATTGGTGAATGCTTTGAAGGATGATCCAATTTTTCAGCCCATGACTGCTTCTCATCTTCAACTTTAG 1377 0.3181 MSHILNEVVATKYEKFEVKFIKKSVIKALNHFPKPFSVINLSNLDLLSGRFPVTYLYFYKKPKLGNFKSFINTLKTSLAQTLNHYYPFSGQIVQNHKTNEPEIICDNNGSLLIEAQINIPLKNLDFYNLNETLEDKIVSVQPNFPSQIQVTEFICGGISIAFTFDHALGDATSFGKFISTWCEISQNKPISCIPNHTRNLRARSPPKYQPYLDQIFIKCTIEDIQNMKMNNNISLKRLYHIDASSINMLQRLASVNGTKRTKIEAFSAYVWKIMINTFDQSKYKKCKMGWLVDGRERMSGSEKPMSNYIGNVLSLAFGSAKIQELKEGSLSNISEIVHDAISKVSNEEHFLDLIDWIEFHRPGLMLAKAVLGQDDGPVLVVSSGQRFPVSEVDLGFGSPLLGTVYTSIERVGVGYMNQRKSGKGDGSWTVSAILWPELVNALKDDPIFQPMTASHLQL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01078 458 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 39 454 - -
Tsu05g01078 458 Pfam Transferase family 17 445 - -
Tsu05g01078 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 39 454 - -
Tsu05g01078 458 Gene3D - 221 444 IPR023213 -
Tsu05g01078 458 Gene3D - 15 212 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01078 Tsu-Chr5 9467235 9468898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01078 42 401 Monolignol Biosynthesis Gene Families AT5G48930 24.668 3.47e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01078 - - mtr:MTR_5g026320 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01078 05 9467235 9468898 Tsu05g01078 05 9467235 9468898 ECH