Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01075 ATGGAGAGGACAAGTTTAGGCCAATGGTTAAATCTTCTGGTGTTTGTACTGGTATGGCTCAAGGCAGAAGCTGCTTTTGTACCAATCACTTATGTCCACAACGCCGTGTTAAAAGGAGCCGTTTGTTTGGATGGTAGTCCACCAGCTTATCATTTAGATAGAGGATATGGAACAGGAATTAACAGTTGGTTAGTTCAATTTGAGGGAGGAGGATGGTGCAATAATGTCACTACTTGCCTTGGTCGAAAGACGAATCGTTTAGGTTCATCTAAGAAAATGGCTAATCAAATTGCATTTTCAGGAATTTTAAATGGCAGAAGACAGTTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTCGATATTGTGACGGTTCATCTTTTACTGGCGACGTAGAAGCAGTCAATCCAGTAACAAAATTGCACTTCAGAGGAGCAAGAGTTTTCAATGCTGTCATGGAGGAGTTGTTAGCAAAAGGAATGAAAAATGCTCAAAATGCTATTATCTCAGGATGTTCAGCTGGAGGATTGACTTCAATACTTCATTGTGATCGCTTTCGGGCTCTTTTACCGACAAGAGCTAGAGTGAAATGTCTCTCAGATGCTGGTTACTTTATCAACGCAAGGGATGTATCTGGAACACAGCACATTGAACAATTCTTCAGTCAAGTTGTTACAACACATGGCTCTGCAAAGAATTTGCCTAAATCATGCACTTCAAGACTCAATCCAAGGCTGTGCTTTTTCCCTCAATATGTTGTATCACAAATCACGACACCAATCTTCTTTGTAAATGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCGCCGGGTGTTGCTGATCCTCAAGGACACTGGCATAGCTGCAAGCTAGATATAAACAACTGCTCTTCTAATCAACTTGATCTAATGCAAGGCTTTAGAACACAATTTCTTAGAGCATTGACTGTTATAGGAAACTCTCCATCCAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACTGAAACACAAGAAACATGGTTTCTAAGTGACTCTCCATTGTTGGCCAAGACAACCATTGCACAAGCTGTAGCAGACTGGTTTTTTGAAAGAAGGCTATTCCATCAGATAGATTGTCCTTACCCTTGCAATCCGAGCTGTCACAACCGCATTTTTGAACCACAAGAAAACCCAGGAGTATAG 1200 0.4092 MERTSLGQWLNLLVFVLVWLKAEAAFVPITYVHNAVLKGAVCLDGSPPAYHLDRGYGTGINSWLVQFEGGGWCNNVTTCLGRKTNRLGSSKKMANQIAFSGILNGRRQFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARVFNAVMEELLAKGMKNAQNAIISGCSAGGLTSILHCDRFRALLPTRARVKCLSDAGYFINARDVSGTQHIEQFFSQVVTTHGSAKNLPKSCTSRLNPRLCFFPQYVVSQITTPIFFVNAAYDSWQIKNILAPGVADPQGHWHSCKLDINNCSSNQLDLMQGFRTQFLRALTVIGNSPSKGMFIDSCYAHCQTETQETWFLSDSPLLAKTTIAQAVADWFFERRLFHQIDCPYPCNPSCHNRIFEPQENPGV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01075 399 PANTHER NOTUM-RELATED 4 394 IPR004963 GO:0016787
Tsu05g01075 399 Pfam Pectinacetylesterase 21 371 IPR004963 GO:0016787
Tsu05g01075 399 SUPERFAMILY alpha/beta-Hydrolases 134 272 IPR029058 -
Tsu05g01075 399 PANTHER PECTIN ACETYLESTERASE 4 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01075 Tsu-Chr5 9437747 9442123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01075 6 399 Carbohydrate Esterase AT4G19420 63.170 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01075 K19882 - gmx:100818146 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01075 05 9437747 9442123 Tsu05g01075 05 9437747 9442123 ECH
Tsu05g01075 05 9437747 9442123 Tsu04g02750 04 31773062 31776505 PCT
Tsu04g02751 04 31783287 31797533 Tsu05g01075 05 9437747 9442123 PCT