Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01073 atgggTTCTAGTGGCAGTAAAGCTACTTCTTGTagttcatcttcttcttcttcttgcaaATTACAAAAGGGTCGATCCAAACGGTTTAAAGGTTTTCCTTCTGATTGTCTTGGAACTACTTCTGGATCTCGTGACAGTGATAATGATGACcagGTTTGTGATCAGAATAAAGTAAATGGAAGTGATACCAACAGCAATGATACCGACTCGGATGAAATGAAATCAGAGTCTTTTAGAAAAGTTAAATCTGATGAAGTACCTTGTGTGCCTTCTAACATTGATCTCGATGAGTGGAGTCGCACTGAATCCAGAACCGCTAGCAGCTCCGCACATGGTTCTTCAACTCAGTCCACAAACCCTACAAGTCGGTTCCTTTCTCGTTTTAGCCTCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAGGTCTTTCAATGTTTAACAATGAAAACGAGCTTAGTCTGCATAATAGAAATGAAACTCAACAATGTAGTGATCGGCTTAATACATCTTTTGTTAATCGAGTCCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCAAATGGCCCGACATTTGGCTTTGCTGGCAATTTGTCGAGCAGTCCTATGCTGTCTCCTATCCAGGATATTGTTAGAGATGGGTATGCTACACGAGACATGCCTGGTATGAACATGTTTTCTCCAAGAGTTCACAATGAAACGGGAAATGTTGAGACTAGACATATGGATAGACGAAATGGGGCTCGAGAACCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTGAGAGATGCTAGTGAGGATAGTGGAAGGCAAGTAGGGGAGATGGGTACAAGAGTGTCACCATCTAATCGTAATGGATTAAATTCTCATACTACATCTGGATATCCTCTACCGAACATGTCTAACTCCACATTTAGCACCCAAGACTATGAGGTCGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGTCGGTTTGAAAATCTTTCTGGACATGAGAGATCATGCATCTTGTCTGGTCAACATAGAAGCGGTCGTTGTACATGCAGAATAACTAATCGCGacaacaattcaaattcaaatgatGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTTGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATCGGATCTGTTCCCGCACCTGCTGAAGTTGTCGAATCCTTACCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCACTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGAGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCATAGGGTATGTCCACTATGTCGGGGAGACATTTGTATATCAGATTCACTGCCAACAACAGAGAACTAA 1695 0.4106 MGSSGSKATSCSSSSSSSCKLQKGRSKRFKGFPSDCLGTTSGSRDSDNDDQVCDQNKVNGSDTNSNDTDSDEMKSESFRKVKSDEVPCVPSNIDLDEWSRTESRTASSSAHGSSTQSTNPTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSAGLSMFNNENELSLHNRNETQQCSDRLNTSFVNRVPIQYHEDASNNLSSNGPTFGFAGNLSSSPMLSPIQDIVRDGYATRDMPGMNMFSPRVHNETGNVETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELRDASEDSGRQVGEMGTRVSPSNRNGLNSHTTSGYPLPNMSNSTFSTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRSGRCTCRITNRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLHKHQEEPLQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICISDSLPTTEN 564
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01073 564 MobiDBLite consensus disorder prediction 322 358 - -
Tsu05g01073 564 MobiDBLite consensus disorder prediction 1 121 - -
Tsu05g01073 564 MobiDBLite consensus disorder prediction 308 365 - -
Tsu05g01073 564 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 562 - -
Tsu05g01073 564 MobiDBLite consensus disorder prediction 67 83 - -
Tsu05g01073 564 CDD mRING-H2-C3H2C2D_ZSWM2 507 550 - -
Tsu05g01073 564 SUPERFAMILY RING/U-box 487 556 - -
Tsu05g01073 564 ProSiteProfiles Zinc finger RING-type profile. 508 550 IPR001841 -
Tsu05g01073 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 554 IPR013083 -
Tsu05g01073 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Tsu05g01073 564 MobiDBLite consensus disorder prediction 102 121 - -
Tsu05g01073 564 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g01073 564 SMART ring_2 508 549 IPR001841 -
Tsu05g01073 564 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 562 - -
Tsu05g01073 564 Pfam Ring finger domain 507 550 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu05g01073 Tsu-Chr5 9425453 9429348 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01073 45 564 C3H Transcription Factor Family AT5G45290 47.330 3.82e-120 363
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01073 - - gmx:100786091 779.245
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01073 05 9425453 9429348 Tsu05g01073 05 9425453 9429348 ECH
Tsu05g01073 05 9425453 9429348 Tsu04g02748 04 31765323 31769135 PCT