Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g01073 | atgggTTCTAGTGGCAGTAAAGCTACTTCTTGTagttcatcttcttcttcttcttgcaaATTACAAAAGGGTCGATCCAAACGGTTTAAAGGTTTTCCTTCTGATTGTCTTGGAACTACTTCTGGATCTCGTGACAGTGATAATGATGACcagGTTTGTGATCAGAATAAAGTAAATGGAAGTGATACCAACAGCAATGATACCGACTCGGATGAAATGAAATCAGAGTCTTTTAGAAAAGTTAAATCTGATGAAGTACCTTGTGTGCCTTCTAACATTGATCTCGATGAGTGGAGTCGCACTGAATCCAGAACCGCTAGCAGCTCCGCACATGGTTCTTCAACTCAGTCCACAAACCCTACAAGTCGGTTCCTTTCTCGTTTTAGCCTCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAGGTCTTTCAATGTTTAACAATGAAAACGAGCTTAGTCTGCATAATAGAAATGAAACTCAACAATGTAGTGATCGGCTTAATACATCTTTTGTTAATCGAGTCCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCAAATGGCCCGACATTTGGCTTTGCTGGCAATTTGTCGAGCAGTCCTATGCTGTCTCCTATCCAGGATATTGTTAGAGATGGGTATGCTACACGAGACATGCCTGGTATGAACATGTTTTCTCCAAGAGTTCACAATGAAACGGGAAATGTTGAGACTAGACATATGGATAGACGAAATGGGGCTCGAGAACCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTGAGAGATGCTAGTGAGGATAGTGGAAGGCAAGTAGGGGAGATGGGTACAAGAGTGTCACCATCTAATCGTAATGGATTAAATTCTCATACTACATCTGGATATCCTCTACCGAACATGTCTAACTCCACATTTAGCACCCAAGACTATGAGGTCGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGTCGGTTTGAAAATCTTTCTGGACATGAGAGATCATGCATCTTGTCTGGTCAACATAGAAGCGGTCGTTGTACATGCAGAATAACTAATCGCGacaacaattcaaattcaaatgatGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTTGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATCGGATCTGTTCCCGCACCTGCTGAAGTTGTCGAATCCTTACCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCACTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGAGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCATAGGGTATGTCCACTATGTCGGGGAGACATTTGTATATCAGATTCACTGCCAACAACAGAGAACTAA | 1695 | 0.4106 | MGSSGSKATSCSSSSSSSCKLQKGRSKRFKGFPSDCLGTTSGSRDSDNDDQVCDQNKVNGSDTNSNDTDSDEMKSESFRKVKSDEVPCVPSNIDLDEWSRTESRTASSSAHGSSTQSTNPTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSAGLSMFNNENELSLHNRNETQQCSDRLNTSFVNRVPIQYHEDASNNLSSNGPTFGFAGNLSSSPMLSPIQDIVRDGYATRDMPGMNMFSPRVHNETGNVETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELRDASEDSGRQVGEMGTRVSPSNRNGLNSHTTSGYPLPNMSNSTFSTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRSGRCTCRITNRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLHKHQEEPLQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICISDSLPTTEN | 564 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 322 | 358 | - | - | |
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 1 | 121 | - | - | |
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 308 | 365 | - | - | |
Tsu05g01073 | 564 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 562 | - | - | |
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 67 | 83 | - | - | |
Tsu05g01073 | 564 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 507 | 550 | - | - | |
Tsu05g01073 | 564 | SUPERFAMILY | RING/U-box | 487 | 556 | - | - | |
Tsu05g01073 | 564 | ProSiteProfiles | Zinc finger RING-type profile. | 508 | 550 | IPR001841 | - | |
Tsu05g01073 | 564 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 471 | 554 | IPR013083 | - | |
Tsu05g01073 | 564 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | - | - | |
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
Tsu05g01073 | 564 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Tsu05g01073 | 564 | SMART | ring_2 | 508 | 549 | IPR001841 | - | |
Tsu05g01073 | 564 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 562 | - | - | |
Tsu05g01073 | 564 | Pfam | Ring finger domain | 507 | 550 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g01073 | Tsu-Chr5 | 9425453 | 9429348 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g01073 | 45 | 564 | C3H Transcription Factor Family | AT5G45290 | 47.330 | 3.82e-120 | 363 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g01073 | - | - | gmx:100786091 | 779.245 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu05g01073 | 05 | 9425453 | 9429348 | Tsu05g01073 | 05 | 9425453 | 9429348 | ECH | |
Tsu05g01073 | 05 | 9425453 | 9429348 | Tsu04g02748 | 04 | 31765323 | 31769135 | PCT |