Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01058 ATGAAGCCTTATATTTTCTTGTTACCTATGTCTTGGTATGCATACCTTCATTTGCTTAATCTTTTTACCGTTACTTTAATGTGTTTTGGTCCAAACAGAACTTTTACTATGGCActaggaaaccaaactgatcaTTTGGCTTTGCTCCAATTCAAGCAACTAATATCTAATGATCCATATGGTATCTTAGATTCTTGGAATAGTTCCACTCACTTTTGCAACTGGCATGGAATCATATGCAGTCCCAAGCATCAGAGAGTTACAAAGTTGAAGTTGGAAGGATACAAGTTGCATGGATCCATATCTCCATATGTTGGAAATCTCTCACATATGAGATTCCTCAACCTTGGAGACAACAACTTCTACGGTAACATTCCACAAGAATTGGGTCGTTTGTCAAGATTAAGATATCTTCTTCTACTCAACAACTCGTTGTCCGGAGAATTTCCAATAAACTTGACAAAGTGCTCAGAGCTCAAAAGGATGATGTTAGTTGGAAACAATCTTATTGGAAAAATACCTAGCCAAATTGGTTATCTTCAAAAGCTTCAACATTTCAGGATggacaaaaataatttatctgGAAAAATTCCACCATCCATAAAGAATCTTGCATCGCTTACTATTTTTATGACGAGTTTTAATAATCTGGAGGGAAATATTCCACAAGAAATTTGCAGCCTAACACAGTTGAAAATTATAGCAATTCATGCTAACAAATTGTCCGGTACATTTCCTTCTTGTCTTTATAATATATCATCTCTTAATGTGATCTCAATTGCATCCAATGAATTTAGTGGCTCTCTTCCATCCAATATGTTCCACACTCTTCCCAATCtccaatatttttcaaatggAGGAAATAATTTCTCAGGTCATATACCCACTTCCATTGCAAATGCTTCAACTTTGACATTACTTGACATTGATACAAACCATTTTGTCGGACAAGTTCCAAATCTAGGTAAGCTACAAAGTCTTAGATTCCTACATTTGGCTTACAACAATTTAGGAGACAATTCCACAGAGGATTTGGAATTTTTAAACTCATTGACAAATTGTAGTAAGTTGCAATTAGTCGATTTGACAGCTAATAATTTTGGAGGTAGTTTGCAAAATTCTATAGGTAATTTGTCCACCTCACTTAATCGATTATCTTTTGGGATGAATCAAATATATGGACAAATCCCTACAGAATTAGGAAATTTAATTAGCTTGAGTGTTTTGACCATGGAATATAACAATTTTGAAGGAACAATTCCAACTACTTTTGGAAAGTTTCAAAAGATACAAATGTTAGCAATGCACGGAAACAAATTATCAGGGGTTATACCATCTTTCATAGGCAACCTTAGTCAAGTATATGTCTTGGAATTAGATGGAAATATGTTTGAAGGTAATATTCCTCCAAATATTGGAAATTGTCAAAAGTTACAATACTTAACTCTTTCGCAAAACAACCTCAAAGGAGCCATACCCTTAGAGATTTTTAACATTTCGTCCTTAACAAACTTACTAAACTTGTCACATAACTCATTGAGTGGTAGTTTACCAAAAGAAGTGGGTATgctaaaaaatattgatatgttAGATGTTTCTGAGAATAATTTGTCCGGGGATATTCCTGAAACTATTGGTGAATGCATGAGtttagaatatatttatttagaagGGAACTCCTTTAGAGGAACCATACCATCCTCTTTGGCATCACTCAAAGGTCTTCAACATTTAGATCTGTCTAGAAATCAATTGTCTGGAGCAATTCCaaagtttttgcaaaatatttCTTTCCTACAATATTTCAATGTTTCTTTCAACATGTTGGAAGGTGAAGTACCAACAGATGGTGTATTTGGAAATGCAACTCAAGTAGCGATTATTGGAAACAATAAGCTTTGTGGGGGTATTTCACAGCTGCATCTACCACCATGCCTTATCAAGGGTAgaaaacatacaaaacaccataAATTCAGGTTGATAGTTGTGATTGTTGGTGtggtttcttttcttctcatacTTTCATTTATGATAACTATGTATTGGGTGAGGAAAAGAAATCTCAAACGAAATTTTGATTCACCAACAATTGATCAACTAGCTAAGGTTTCATACCAAGACTTACATCGAGTAACAAATGGCTTCTCGACTAGAAACTTGATCGGATCAGGAAGTTTTGGTTCTGTTTACAGAGGAAATCTTGTGTCAGAAGATAATGTTGTTGCTGTGAAGGTCCTTAACCTCCAAAAGAAGGGAGCTCGCAAGAGTTTCTTTGTTGAATGTAATGCACTCAGAAACATTAGACACCGAAATTTAGTTAAGGAATGTGAGCAATTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGAAGACATGGTTGCTCATGTGATTGATTTTGGCATAGCAAGACTTGTCTCAACCATTTGTGGTAATAGTAGTACAATTGGAATCAAAGGGAGTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCTACATGTGGTGACATGTATAGTTTTGGAATCCTTATCTTGGAGATGCTTACCGGTAGAAGACCCACCGATGAAGTTTTCAAAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCATTTCCTGATAATCTTGGAACTATTTTTTACCCACATCTTGTATCAAGAGATGCCGAAGTGGCAGAAGATGGAAACAATGAAATTTTGATTCCGACTACAAAGGAGTGcttagtttcactttttagGATTGGACTTATTTGTTCAATGGAATCACCGAAGGAAAGAATGAATATTGTGGATGTCACTAGAGAGGTTTTCGCACTCATAATTAGTATCTAA 2853 0.3379 MKPYIFLLPMSWYAYLHLLNLFTVTLMCFGPNRTFTMALGNQTDHLALLQFKQLISNDPYGILDSWNSSTHFCNWHGIICSPKHQRVTKLKLEGYKLHGSISPYVGNLSHMRFLNLGDNNFYGNIPQELGRLSRLRYLLLLNNSLSGEFPINLTKCSELKRMMLVGNNLIGKIPSQIGYLQKLQHFRMDKNNLSGKIPPSIKNLASLTIFMTSFNNLEGNIPQEICSLTQLKIIAIHANKLSGTFPSCLYNISSLNVISIASNEFSGSLPSNMFHTLPNLQYFSNGGNNFSGHIPTSIANASTLTLLDIDTNHFVGQVPNLGKLQSLRFLHLAYNNLGDNSTEDLEFLNSLTNCSKLQLVDLTANNFGGSLQNSIGNLSTSLNRLSFGMNQIYGQIPTELGNLISLSVLTMEYNNFEGTIPTTFGKFQKIQMLAMHGNKLSGVIPSFIGNLSQVYVLELDGNMFEGNIPPNIGNCQKLQYLTLSQNNLKGAIPLEIFNISSLTNLLNLSHNSLSGSLPKEVGMLKNIDMLDVSENNLSGDIPETIGECMSLEYIYLEGNSFRGTIPSSLASLKGLQHLDLSRNQLSGAIPKFLQNISFLQYFNVSFNMLEGEVPTDGVFGNATQVAIIGNNKLCGGISQLHLPPCLIKGRKHTKHHKFRLIVVIVGVVSFLLILSFMITMYWVRKRNLKRNFDSPTIDQLAKVSYQDLHRVTNGFSTRNLIGSGSFGSVYRGNLVSEDNVVAVKVLNLQKKGARKSFFVECNALRNIRHRNLVKECEQLVIHCDLKPSNVLLDEDMVAHVIDFGIARLVSTICGNSSTIGIKGSVGYAPPEYGMGSEVSTCGDMYSFGILILEMLTGRRPTDEVFKDGQNLHNFVAISFPDNLGTIFYPHLVSRDAEVAEDGNNEILIPTTKECLVSLFRIGLICSMESPKERMNIVDVTREVFALIISI 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01058 950 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Tsu05g01058 950 Pfam Protein tyrosine and serine/threonine kinase 718 774 IPR001245 GO:0004672|GO:0006468
Tsu05g01058 950 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Tsu05g01058 950 Pfam Protein kinase domain 778 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01058 950 Gene3D Ribonuclease Inhibitor 323 654 IPR032675 -
Tsu05g01058 950 ProSiteProfiles Protein kinase domain profile. 608 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01058 950 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Tsu05g01058 950 SUPERFAMILY L domain-like 42 337 - -
Tsu05g01058 950 Gene3D Ribonuclease Inhibitor 43 159 IPR032675 -
Tsu05g01058 950 Gene3D Transferase(Phosphotransferase) domain 1 779 943 - -
Tsu05g01058 950 PANTHER LRR RECEPTOR-LIKE KINASE 29 774 - -
Tsu05g01058 950 PANTHER LRR RECEPTOR-LIKE KINASE 773 940 - -
Tsu05g01058 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Tsu05g01058 950 Gene3D Ribonuclease Inhibitor 160 320 IPR032675 -
Tsu05g01058 950 SUPERFAMILY Protein kinase-like (PK-like) 687 941 IPR011009 -
Tsu05g01058 950 PANTHER OS04G0122200 PROTEIN 29 774 - -
Tsu05g01058 950 PANTHER OS04G0122200 PROTEIN 773 940 - -
Tsu05g01058 950 SMART serkin_6 715 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01058 950 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Tsu05g01058 950 SUPERFAMILY L domain-like 380 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01058 Tsu-Chr5 9293626 9296970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01058 41 946 Receptor kinase-like Gene Family AT5G20480 39.819 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01058 Pkinase 1.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01058 - - mtr:MTR_5g025930 1262.67