Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01056 ATGTATCTTTTAACAAGTTGGATGGTGAAAAATGGGAGCTTAGAACGATGGTTGCATCTTGAGATTTTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAAATGGTTATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTGGATGATGACATGGTTGCTCATGTGAGCAATTTTGGCATAGCTAGACTCTTCTCAGTCATTGACGGTAACTCTCATATGAATACTAGTACAATTGGCTATGCTCCTCCAGAGTATGGGATGGGTTCTGAAGTGTCCACATGTGGTGACATGTATAGTTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAAAAGACCCACTGATGAAGTTTTTGAAGATGGCCAAAATCTGCATAACTTTGTTGGGAATTTATTTCCTGATAATCTTATAAAGATTTTGGATCCAAATATTGTATCAAGAAATGTAGAAAACAATGAGATTCTTATTCCAAGTGCAGAGGAGTgcttaatttcactttttaagatTGGACTTGTTTGTTCAATGGAATCACTgaaagaaagaatgaatattGTGGATGTCAATAGAGAGCTTATCATAATCAAAAAGGCCTTTCTCGCCGGTGAGATAAACTGA 684 0.3523 MYLLTSWMVKNGSLERWLHLEILNAEPPTTLDLSHRLNIIIDVASALHYLHQECEQMVIHCDLKPSNVLLDDDMVAHVSNFGIARLFSVIDGNSHMNTSTIGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTGKRPTDEVFEDGQNLHNFVGNLFPDNLIKILDPNIVSRNVENNEILIPSAEECLISLFKIGLVCSMESLKERMNIVDVNRELIIIKKAFLAGEIN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01056 227 Pfam Protein kinase domain 8 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01056 227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 224 - -
Tsu05g01056 227 SUPERFAMILY Protein kinase-like (PK-like) 8 216 IPR011009 -
Tsu05g01056 227 Gene3D Transferase(Phosphotransferase) domain 1 9 222 - -
Tsu05g01056 227 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 9 224 - -
Tsu05g01056 227 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01056 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 58 70 IPR008271 GO:0004672|GO:0006468
Tsu05g01056 227 SMART serkin_6 2 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01056 Tsu-Chr5 9290966 9291743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01056 11 222 Receptor kinase-like Gene Family AT3G47580 46.154 2.60e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01056 Pkinase 1.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01056 - - mtr:MTR_5g025930 339.732