Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01055 ATGAAACCTTATATTTTCTTGTTACCTATGTCTTGGTATCTATACTTTCATTTGCTTAACCTTTTTACCTTAATCTTAATGTGTTTTGGCCCAAATTACAGAACTTTGACAATTGCACTAGAAAACCAAACCGATCATTTGGCATTGCTGCAATTCAAGCAACTAATATCCAATGATCCATATGGTATCCTAGATTCTTGGAATAGTTCAACTCACTTTTGCAACTGGCATGGAATCACGTGCAATCCCAAGCATCAAAGAGTTACAAAGTTGATCTTGCAAGGATACAAGTTGCATGGATCCATATCTCCATATGTTGGTAATCTCTCTCATATCAGATACTTTAACCTTGCAGACAacaacttatatgaaaatattccACAAGAGTTAGGTCGTTTGTCAAGATTAAGGAATCTCCTTCTAGTCAACAACTTGTTGGTTGGAGAATTTCCAATAAACTTGACAAATTGCTCAGAGCTCAAAACCTTGCGCTTAGGTGGAAACAAACTGATTGGCAAAATACCTAGCCAAATTGGTTCTCTTCAAAAGCTTCAAGTCTTTAACATGGTACAAAACAATTTATCCGGAAAAATCACACCATCCATAAGGAATCTTTCAtctcttaatatatttttggtggGTGAAAATAACTTGGTGGGAAATATTCCACAAGAAATGTGCTTCCTAAAACAATTGATCGCTATCGCAGTTCATGTCAACAAATTGTCTGGTACATTTCCTTCTTGTCTTTATAATATGTTAACTCTTAATGTGATCTCAGCTGCTGAGAATAACTTTAGTGGCTCTCTTCCACCCAATATGTTCCACACTCTTCCCAatctccaatttttttcaattggaTTAAATAATTTCTCAGGTCATATACCCACTTCCATTGCAAATGCTTCTACTTTGACAACATTTGTGATTTCTATAAACCATTTTGTCAGACAAGTTCCAAATCTAGGTAAGCTACAAAGTCTTAGAAGGCTAAAATTGAGTGATAACAATTTAGGAGACAATTCCACAACGGATTTGGAGTTTTTAAACTCATTGACAAATTGTAGTAAGTTGCAAGAGCTTCATTTGAATTCTAATAATTTTGGAGGTAGTTTGCAAAATTCTATAGGTAATTTGTCCACCACACTTAATCAATTACTTTTCATGGATAATCGAATATATGGAACAATTCCTATAGAATTAGGAAATCTAATTAACTTGAGTCTCTTGAGGATGGAATATAACAATTTGGAAGGAACAATTCCAACTACTTTTGGAAAGTTTCAAAAGATACAAAAGTTATCATTGTACGCAAACCATTTATCAGGGGTTATACCATCTTTCATAGGCAACCTTAGTCAACTGTATGCTTTGAGTCTAGATGGAAATATGTTTGAAGGTAATATTCCTCCAAATATTGGAAATTGTCAAAAGTTACAATGGTTAACTCTTTCACAAAACAACCTCGAAGGAGTCATACCCTTAGAGATTTTCAACATTTCGTCTTTAACAAACATACTAGACTTGTCAAAAAACTCACTGAGTGGTAACTTACCAAAAGAAGTGGGTATgctaaaaaatattgattggCTAGATGTCTCTGAGAATCATTTGTCGGGGGATATTCCTAAAAGCATTGGTGAATGCATAAGTTTAGAATATCTTTATTTGGAAGGGAACTCCTTTGGAGGAAATATACCATCTTCTTTGGCATCGCTGAAAGGTCTTCAAAGTTTAGATCTGTCTAGAAATCAATTGACTGGGGCAATTCcaaaaattttgcaaaatatttcTTTCCTAAAACATTTCAATGTTTCTTTCAACATGTTGGAAGGTGAGGTACCGACAGATGGTGTATTTAGAAATGCAACTCAAGTAGCAATTATTGGAAACAACAAGCTTTGTGGGGGTATTTCACAGCTGCATCTACCACCATGCCTTATCAAGGGTAGGAAATACACAAAACACCATAAATTCAAGTTGATAGTAGTGATCGTTAGTGtggtttcttttcttctcatacTTTCATTTATTATAACTATGTATTGGATGAGGAAAAGAAATCTAAAACGAAATTTTGATTCACCAACAATTGATCAACAACCTAAGGTTTCATACCAAGACTTACATCGAGGAACAGATGGTTTCTCGACTAGAAACTTGATCGGATCAGGAAGTTTTGGTTCTGTTTATAGAGGATGTCTTGTGCCAGAAGATAATATTGTTGCTGTGAAGGTCCTTAACCTCCAAAAGAAGGGAGCTCGCAAGAGTTTCTTTGTTGAATGTAATGCACTCAGAAACATTAGACACCGAAATTTAGTTAAGGTTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCAAAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAATTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGAAGACATGGTTGCTCATGTGATTGATTTTGGCATAGCAAGACTTGTCTCAACCATTTGTGGTAATAGTAGTACAATTGGAATCAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCCACGTGTGGTGATATCTATAGTTTTGGAATCCTTATGTTGGAGATGCTTACTGGTAGAAGACCCACCGATGAAGTTTTCAAAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCATTTCCTGATAATCTTGGAACTGTTTTTTACCCACATCTTGTATCAAGAGATGCCGAAGTGGCAGAAGATGGAAACAATGAAATTTTGATTCCGACTACAAAGGAGTGcttagtttcactttttagGATTGGACTTATTTGTTCAATGGAATCACCGAAGGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAGCATAATCAGAAAGACCTTTCTCACTGGTTTTCGCACTCATAATTAG 3078 0.3418 MKPYIFLLPMSWYLYFHLLNLFTLILMCFGPNYRTLTIALENQTDHLALLQFKQLISNDPYGILDSWNSSTHFCNWHGITCNPKHQRVTKLILQGYKLHGSISPYVGNLSHIRYFNLADNNLYENIPQELGRLSRLRNLLLVNNLLVGEFPINLTNCSELKTLRLGGNKLIGKIPSQIGSLQKLQVFNMVQNNLSGKITPSIRNLSSLNIFLVGENNLVGNIPQEMCFLKQLIAIAVHVNKLSGTFPSCLYNMLTLNVISAAENNFSGSLPPNMFHTLPNLQFFSIGLNNFSGHIPTSIANASTLTTFVISINHFVRQVPNLGKLQSLRRLKLSDNNLGDNSTTDLEFLNSLTNCSKLQELHLNSNNFGGSLQNSIGNLSTTLNQLLFMDNRIYGTIPIELGNLINLSLLRMEYNNLEGTIPTTFGKFQKIQKLSLYANHLSGVIPSFIGNLSQLYALSLDGNMFEGNIPPNIGNCQKLQWLTLSQNNLEGVIPLEIFNISSLTNILDLSKNSLSGNLPKEVGMLKNIDWLDVSENHLSGDIPKSIGECISLEYLYLEGNSFGGNIPSSLASLKGLQSLDLSRNQLTGAIPKILQNISFLKHFNVSFNMLEGEVPTDGVFRNATQVAIIGNNKLCGGISQLHLPPCLIKGRKYTKHHKFKLIVVIVSVVSFLLILSFIITMYWMRKRNLKRNFDSPTIDQQPKVSYQDLHRGTDGFSTRNLIGSGSFGSVYRGCLVPEDNIVAVKVLNLQKKGARKSFFVECNALRNIRHRNLVKVLTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLSQRLNIIIDVASALHYLHQECEQLVIHCDLKPSNVLLDEDMVAHVIDFGIARLVSTICGNSSTIGIKGTVGYAPPEYGMGSEVSTCGDIYSFGILMLEMLTGRRPTDEVFKDGQNLHNFVAISFPDNLGTVFYPHLVSRDAEVAEDGNNEILIPTTKECLVSLFRIGLICSMESPKERMNIVDVTRELSIIRKTFLTGFRTHN 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01055 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Tsu05g01055 1025 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Tsu05g01055 1025 SMART serkin_6 716 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01055 1025 Gene3D Ribonuclease Inhibitor 255 646 IPR032675 -
Tsu05g01055 1025 SUPERFAMILY L domain-like 43 338 - -
Tsu05g01055 1025 PANTHER OS04G0122200 PROTEIN 31 1020 - -
Tsu05g01055 1025 SUPERFAMILY L domain-like 383 636 - -
Tsu05g01055 1025 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Tsu05g01055 1025 PANTHER LRR RECEPTOR-LIKE KINASE 31 1020 - -
Tsu05g01055 1025 Gene3D Transferase(Phosphotransferase) domain 1 798 1019 - -
Tsu05g01055 1025 Gene3D Phosphorylase Kinase; domain 1 679 797 - -
Tsu05g01055 1025 Pfam Protein kinase domain 718 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01055 1025 SMART LRR_typ_2 525 549 IPR003591 -
Tsu05g01055 1025 SMART LRR_typ_2 404 427 IPR003591 -
Tsu05g01055 1025 SMART LRR_typ_2 109 133 IPR003591 -
Tsu05g01055 1025 SMART LRR_typ_2 573 596 IPR003591 -
Tsu05g01055 1025 SMART LRR_typ_2 452 476 IPR003591 -
Tsu05g01055 1025 Gene3D Ribonuclease Inhibitor 41 191 IPR032675 -
Tsu05g01055 1025 Gene3D Ribonuclease Inhibitor 192 254 IPR032675 -
Tsu05g01055 1025 ProSiteProfiles Protein kinase domain profile. 716 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01055 1025 SUPERFAMILY Protein kinase-like (PK-like) 693 1010 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01055 Tsu-Chr5 9279598 9282956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01055 37 1023 Receptor kinase-like Gene Family AT3G47570 45.309 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01055 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01055 - - mtr:MTR_5g025930 1472.6