Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01050 ATGTTTCcaacattttcattttgtttatctCTTGTCTTTGCTTTCAATTTCATCCAAAACACATTTACCTCTTCCTTGGGAAACAAGACAGATAACTCGGCATTGCTCAAACTCAAAGAATCGATATCTAATGACCCATATGGAATCTTAGCCTCTTGGAATACTTCAACTCACCACTGTAACTGGCATGGAATTACATGCAGTCCCAGACATCAAAGAGTTACAGAGTTAAACTTAGAAGGGTATAATTTGCATGGATTCATATCTTCCCATGCTGGCAATCTTTCCTTTTTGAGAAACCTCAACCTTGCAAACAATAGTTTCTATGGAAAAATCCCACATGAACTCGGTCGATTGTTCCGATTGCAGAAACTCATTCTCTCCAACAACTCCATGACAGGAGAGATTCCTACAAACCTGTCAAGTTGCTCTGATCTTCAAGTCTTATCCTTATCTAGAAatcattttattggaaaaatacCAATTGGAATCAACTCACTTCATAAGCTTCGAAGGTTGCAGATTTCATATAACAATGTAACTGGAAGAATTCCACCATTCATAGCAAATCTTTCATCCCTAACTATTCTTTCGGTGGGTAATAATCACTTAGAGGGAGATATTCCACAAGAAATGTGCAGCCTGGAAAACTTGACAATTATGGTTGTGGAAATAAACAAACTATATGGTACATTTCCCTCTTGTCTATATAATATGTCATCTCTTACTCATATAGCAGTTGCATTCAATGATTTTAACGGATCTCTTCCGCTCAATATGTTCAACACCCTCTCTAATCTTCAAGAATTCTTAATTGGAAGAAATCAATTCTCAGGTACAATCCCCGTTTCCATTGCAAATGCTTCTACCCTACAAAACCTCGACTTATCTCAAAACAATTTGGTCGGACAAGTTCCAAGTCTAGGAAAGTTACATGATCTTCGATGGCTAAATTTAGGAACAAACAATTTAGGTGACAATTCAACTAGGGATTTGGAGTTTTTAAAAACCTTGACAAACTGTAGTAAATTAAGTCTGATTTCTATATCCAATAATAATTTTGGAGGCAACTTACCAAATTTTGTAGGCAATTTATCCACTCAACTTAGTGAACTATTTCTTGGGGGTAATCAGATATCAGGAAAAATTCCTACAAAATTAGGAAATCTAATTGGCTTAATTCGCTTGAGCCTGGACTATAGCTACTTTGAAGGAGTTATTCCTACTTCTTTTGGGAAGTTTAAGAAAATGCAAAAGCTAGAATTGAATGTAAATAACTTGTCAGGAGAGGTACCACCCATTATAGGAAACCTCAGTCAATTATATTATTTGGATATAGGTGATAATATGTTAGGAGGAAATATTCCTTCAAGTATGGGAAACTGCAAAAAGTTACAATACTTAGACATTTCACAAAACAATCTTAGAGGAACCATACCCTTAGAGGTCTTTACTCTTACCTCTTTGACAAACTTACTGAACTTGTCAAAAAACTCCTTCAGTGGTAGCTTACCTAGAGAAGTGGGTATGCTAAAAAGCATCATTGAGCTAGATGTCTCGGAGAATCATCTATCCGGTGACATTCCTGGAACCATTGGAGAATGCATTGGATTACAAGACCTCTACTTACAAGGGAACTTCTTCAACGAAACAATACCATCCTCATTCGCTTCACTTAAAGATCTTCAATATTTAGACTTGTCAAGAAATCTCTTGTCTGGCCCAATTCCTAGTGTTCTACAAAATATATCAGTTTTAAAACACTTAAATGTTTCTTTCAATATGTTGGAAGGCGAGGTGCCGATGGAAGGTGTCTTTGGAAATGTAAACAAGTTAGCTGTGACCGGAAACAATAAGCTTTGTGGAGGTATTTCAGAGCTTCGTCTACAGCCGTGCCCTGTTAAAGATTTGAAACATGCAAAACACCATAAAATCAACCAAGGTTTCATACCAAGACTTCACAATGGAACTGATGGGTTTTCTGCTAGCAACTTGGTTGGATTAGGAAGTTTTGGTTCTGTGTACAAAGGAAGTCTTACATCAGAAGATAAAGTTGTTGCCATAAAGGTCCTGAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCAGAATGTAATGCACTTAAAAATATGAGACACCGGAATTTGGTGAAAATTTTGACATGTTGTTCAAGTGCAGATTATAAAGGTCGAGAATTTAAGGCATTAGTGTTTGAATACATGAGCAATGGAAGCTTAGAGCAGTGGCTACATCCAGGGATAGTGAATGGAGGGAATCAAAGAATGTTGGAcctaaatcaaatatttaatatCATTGTCGACATTGCTTCTGTATTACATTACCTTCATCATGAGTGTGACAAATTGGTTATTCATTGTGATCTAAAGCCAATCAATGTTCTTCTTGACGATGATATGGTTGCTCGTGTGAGTGATTTCGGCATAGCAAGACTTGTCTCAGTTATTGACGGCACCTCTCACCAGGAAAGTAGTACAATTGGAATTAAAGGGACTATTGGATATGCTCCTCCAGAGTATGGAATGGGTTCTGAAATATCCACATATGGTGACATGTATAGCTTCGGGGTACTTATGTTGGAAATGCTTACCAGAAGACCGACAGACGAAATGTTTGAAGATGGTCAAAATCTACACATGTTTGTTGAAAAGTCATTTCCTAATAATCTTATACAGATTTTGGACCTACATCTTCTACCAAGAAATGAAGAAGCGACAATAGAAGATGGAAACATTGGGAGTATCACTCCAATTGTAGAGAAGTGTTTTGTTTCACTTTTTCGGATTGGACTTGCTTGTTCAATGGAATCaccaaaagaaagaatgaatatAGTGGATGTTACCAGAGAGCTAAGAATCACCAAAAAGGCCTTTATTTCTGGTTAG 2907 0.3619 MFPTFSFCLSLVFAFNFIQNTFTSSLGNKTDNSALLKLKESISNDPYGILASWNTSTHHCNWHGITCSPRHQRVTELNLEGYNLHGFISSHAGNLSFLRNLNLANNSFYGKIPHELGRLFRLQKLILSNNSMTGEIPTNLSSCSDLQVLSLSRNHFIGKIPIGINSLHKLRRLQISYNNVTGRIPPFIANLSSLTILSVGNNHLEGDIPQEMCSLENLTIMVVEINKLYGTFPSCLYNMSSLTHIAVAFNDFNGSLPLNMFNTLSNLQEFLIGRNQFSGTIPVSIANASTLQNLDLSQNNLVGQVPSLGKLHDLRWLNLGTNNLGDNSTRDLEFLKTLTNCSKLSLISISNNNFGGNLPNFVGNLSTQLSELFLGGNQISGKIPTKLGNLIGLIRLSLDYSYFEGVIPTSFGKFKKMQKLELNVNNLSGEVPPIIGNLSQLYYLDIGDNMLGGNIPSSMGNCKKLQYLDISQNNLRGTIPLEVFTLTSLTNLLNLSKNSFSGSLPREVGMLKSIIELDVSENHLSGDIPGTIGECIGLQDLYLQGNFFNETIPSSFASLKDLQYLDLSRNLLSGPIPSVLQNISVLKHLNVSFNMLEGEVPMEGVFGNVNKLAVTGNNKLCGGISELRLQPCPVKDLKHAKHHKINQGFIPRLHNGTDGFSASNLVGLGSFGSVYKGSLTSEDKVVAIKVLNLQKKGAHKSFIAECNALKNMRHRNLVKILTCCSSADYKGREFKALVFEYMSNGSLEQWLHPGIVNGGNQRMLDLNQIFNIIVDIASVLHYLHHECDKLVIHCDLKPINVLLDDDMVARVSDFGIARLVSVIDGTSHQESSTIGIKGTIGYAPPEYGMGSEISTYGDMYSFGVLMLEMLTRRPTDEMFEDGQNLHMFVEKSFPNNLIQILDLHLLPRNEEATIEDGNIGSITPIVEKCFVSLFRIGLACSMESPKERMNIVDVTRELRITKKAFISG 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01050 968 Gene3D Phosphorylase Kinase; domain 1 641 741 - -
Tsu05g01050 968 SUPERFAMILY Protein kinase-like (PK-like) 652 959 IPR011009 -
Tsu05g01050 968 SUPERFAMILY L domain-like 30 324 - -
Tsu05g01050 968 SUPERFAMILY L domain-like 342 622 - -
Tsu05g01050 968 PANTHER OS04G0122200 PROTEIN 18 645 - -
Tsu05g01050 968 PANTHER OS04G0122200 PROTEIN 653 966 - -
Tsu05g01050 968 Pfam Protein kinase domain 663 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01050 968 PANTHER LRR RECEPTOR-LIKE KINASE 18 645 - -
Tsu05g01050 968 PANTHER LRR RECEPTOR-LIKE KINASE 653 966 - -
Tsu05g01050 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Tsu05g01050 968 ProSitePatterns Protein kinases ATP-binding region signature. 666 689 IPR017441 GO:0005524
Tsu05g01050 968 SMART LRR_sd22_2 366 392 - -
Tsu05g01050 968 SMART LRR_sd22_2 191 217 - -
Tsu05g01050 968 SMART LRR_sd22_2 414 440 - -
Tsu05g01050 968 SMART LRR_sd22_2 462 483 - -
Tsu05g01050 968 SMART LRR_sd22_2 559 585 - -
Tsu05g01050 968 ProSiteProfiles Protein kinase domain profile. 660 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01050 968 SMART serkin_6 660 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01050 968 Gene3D Ribonuclease Inhibitor 310 640 IPR032675 -
Tsu05g01050 968 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Tsu05g01050 968 Gene3D Ribonuclease Inhibitor 27 309 IPR032675 -
Tsu05g01050 968 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Tsu05g01050 968 Gene3D Transferase(Phosphotransferase) domain 1 742 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01050 Tsu-Chr5 9240790 9243901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01050 23 965 Receptor kinase-like Gene Family AT3G47570 42.557 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01050 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01050 - - gmx:100785561 1218.37