Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01047 ATGAAGTCTTGGTCTTTCTTGTCACCTACACTTTTATACCTTCATCTGCTTTTTGTGTTTACCTTTAATTTAATGAGCTTTGGCCCAAACAAAATTGTGGCAGTGGCTGCAATATTAGGAAACCAAACAGATCATTTGGCATTGCTCAAATTTAAAGAATCAATATCCAGTGATCCATATACAACTCTTGAATCTTGGAATTCTTCCATGCAATTCTGTAAATGGCGTGGAATCACATGCAACCCCATGCATGAAAGAGTTATAGGGTTGAACCTAAATAAATATCAGTTACATGGATCATTATCTCTCCATATTGGTAATCTTACTTTTCTGAGAAATCTCGACCTTGGAAACAACAGCTTCTTTGGAGAAATCCCAAAGGCGTTAGGTCAGTTGCTACAATTGCAAAAACTTTTTCTCTCCAATAACTCTTTTGTAGGTGAAATTCCTACAAACTTGACATATTGCACCAATCTTAAACAGTTATTCTTGGATGGGAACAATCTTATTGGTAAAATACCAATTGGAATTGGCTCTTTGAACAAGCTTCAAAGAATGACTGTTTCTAGTAACAAATTAACTGGAGGAATCCCTACATTTATAGGGAATCTTTCATCCTTAACACATTTTTCCTTTGCTCGTAACAACTTAGAAGGAGATATTCCACAAGCAATTTGTCGCCTGAAAAACTTGACAGTTTTACTTGTTGGTGAGAACAATTTGTCTGGTACCCCTGCTTCTTGTCTTTACAACATCACATCACTTACTATATTTTACATGACATGGAATATCTTTCACGGCCCTCTTCCACCCAACATGTTTCACACTCTCCCAAATATCCAACAGTTTGGTATTGCAGGAAATCAATTTTCAGGTCCAATCCCCACTTCTATAAATGCCTCTTCTTCCATTAATGTACTTGATATTTCTAACAATTATTTTGTTGGACAAGTTCCAAGTCTAGGAAAGCTAAAAGATTTATACCATCTGAATTTGGAACTCAACAATTTAGGTAAGAATTCAGATAAGGATTTAGAGTTTTTAAAACCTTTGACAAACTGTAGTAAATTGTATCAACTTTATTTTGACGCAAATAACTTTGGAGGCGTTCTTCCAAATTCTATAGGCAATTTAACCAATGAGCTAAAAATGCTATATCTTGGGGGTAATATGATATCAGGAAAAATTCCTGCTGAATTAGGTCGTCTAGTTGGCTTATTGTCACTGTCCTTGGAATCTAACCACTTTGAAGGAGTTATTCCTACTACTTTTGGAAAGTTTCAAAAATTGCAAATGTTACGTTTGAACGTAAACAAGTTGTCAGGGGATATACCACACTTTATAGGTAATCTCAGTCAATTGTATCATTTGAATTTACATCTTAATATGTTCCACGGAAATATTCCTTCTACCATAGGAAACTGTAAAAAGTTACAATATCTAGATCTTTGGCAGAATAAGCTTAGAGGAACCATACCTTTAGAggtttttaatcttttttctttaacaaaCCTCTTGGACTTGTCACATAATTCTTTGAGTGGTAGCTTAccaagagaagtgggtatgctAAAGAATATAGATCGGCTAGATGTCTCTGAGAATCATTTATCTGGGAATATTCCTGAAAATATTGGTGAATGCATAAGCTTAGAGTACCTCAATTTACAAGGGAACTCCTTCAACGGAACGATACCATCCGCTTTGGCTTCTCACAAAGGTCTGCGATATTTAGATCTTTCAAGAAATCAATTCTATGGACCAATTCCTGATGCAATGCAAAACATCTCTAGCTTAGAATACTTGAATGTTTCTTTCAACATGTTGGAAGGTAAGGTGCCAACATATGGTGTATTTGCAAATGCAACCCAAGTAGCAATCAGTGGAAACAATAAGCTTTGTGGAGGTATTGCACAACTGCATCTACCACCATGCCATATCAAGGCcagaaaacacacaaaacacCATAAATCCAGGTTGATAATAGTGATAGCTAGTGTGGTTTCTTTTCTCCTCATTCTTTCATTTATTATAACTATCTTTTGGATGAGGAAAAGAAGTCAAAAACGACCTTTTGATTCACCAACAATTGATCAACTAACTAAGGTTTCATATCAAGCCTTACATCGAGGAACTGATGGGTTCTCAACAAGAAACTTGATAGGTTCTGGAAGTTTTGGTTGTGTGTATAGAGGAAATCTTGCGCCAGAAGATAATGTTGTTGCTGTAAAGGTCTTGAACCTCCAAAAACAGGGAGCTCACAAGAGTTTTATTGTTGAATGTAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTGGAACAATGGTTGCATCCTGAGATTCTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGCGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTGGATGATGACATAGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCGGTCATTGGTGATACCTCTCATACAGATACTAGTACAATTGGAATAAAAGGAACCGTTGGTTATGCCCCTCCTGAGTATGGATTGGGTTCAGAAGTGTCCACATTTGGTGACATGTATAGCTTCGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACTGATGAAGTTTATGGAGATGGTCAAAATCTGCATAACTTTGTTGCAATGTCATTTCCTGATAATCTTATAAAGATTTTGGACCCACATCTTTTGTCAAGTGATGGAGAAGTAGCAATTGAAGATCGAAACCGTGAGAATCTTATTCCAACAGTAGAGGAGTgcttaatttcactttttaggaTTGGACTTGCTTGTTCATTGGAATCACCTaaagaaagaatgaatattGTGGATGTCACTAAAGAGCTAAGCATAATCAAAAAGACTTTTTTCTCCGGTGTTCGCTATCACAATTTGTAA 3093 0.3514 MKSWSFLSPTLLYLHLLFVFTFNLMSFGPNKIVAVAAILGNQTDHLALLKFKESISSDPYTTLESWNSSMQFCKWRGITCNPMHERVIGLNLNKYQLHGSLSLHIGNLTFLRNLDLGNNSFFGEIPKALGQLLQLQKLFLSNNSFVGEIPTNLTYCTNLKQLFLDGNNLIGKIPIGIGSLNKLQRMTVSSNKLTGGIPTFIGNLSSLTHFSFARNNLEGDIPQAICRLKNLTVLLVGENNLSGTPASCLYNITSLTIFYMTWNIFHGPLPPNMFHTLPNIQQFGIAGNQFSGPIPTSINASSSINVLDISNNYFVGQVPSLGKLKDLYHLNLELNNLGKNSDKDLEFLKPLTNCSKLYQLYFDANNFGGVLPNSIGNLTNELKMLYLGGNMISGKIPAELGRLVGLLSLSLESNHFEGVIPTTFGKFQKLQMLRLNVNKLSGDIPHFIGNLSQLYHLNLHLNMFHGNIPSTIGNCKKLQYLDLWQNKLRGTIPLEVFNLFSLTNLLDLSHNSLSGSLPREVGMLKNIDRLDVSENHLSGNIPENIGECISLEYLNLQGNSFNGTIPSALASHKGLRYLDLSRNQFYGPIPDAMQNISSLEYLNVSFNMLEGKVPTYGVFANATQVAISGNNKLCGGIAQLHLPPCHIKARKHTKHHKSRLIIVIASVVSFLLILSFIITIFWMRKRSQKRPFDSPTIDQLTKVSYQALHRGTDGFSTRNLIGSGSFGCVYRGNLAPEDNVVAVKVLNLQKQGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLSHRLNIIIDVASALHYLHQECEQLVLHCDLKPSNVLLDDDIVAHVSDFGIARLVSVIGDTSHTDTSTIGIKGTVGYAPPEYGLGSEVSTFGDMYSFGILMLEMLTGRRPTDEVYGDGQNLHNFVAMSFPDNLIKILDPHLLSSDGEVAIEDRNRENLIPTVEECLISLFRIGLACSLESPKERMNIVDVTKELSIIKKTFFSGVRYHNL 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01047 1030 SMART serkin_6 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01047 1030 SMART LRR_typ_2 524 548 IPR003591 -
Tsu05g01047 1030 SMART LRR_typ_2 108 132 IPR003591 -
Tsu05g01047 1030 SMART LRR_typ_2 403 426 IPR003591 -
Tsu05g01047 1030 SMART LRR_typ_2 228 251 IPR003591 -
Tsu05g01047 1030 SMART LRR_typ_2 451 475 IPR003591 -
Tsu05g01047 1030 Gene3D Ribonuclease Inhibitor 41 199 IPR032675 -
Tsu05g01047 1030 Gene3D Transferase(Phosphotransferase) domain 1 797 1024 - -
Tsu05g01047 1030 Gene3D Ribonuclease Inhibitor 349 646 IPR032675 -
Tsu05g01047 1030 Gene3D Ribonuclease Inhibitor 201 348 IPR032675 -
Tsu05g01047 1030 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Tsu05g01047 1030 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Tsu05g01047 1030 PANTHER OS04G0122200 PROTEIN 29 1025 - -
Tsu05g01047 1030 SUPERFAMILY Protein kinase-like (PK-like) 690 1015 IPR011009 -
Tsu05g01047 1030 Pfam Protein kinase domain 717 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01047 1030 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Tsu05g01047 1030 Pfam Leucine rich repeat 182 241 IPR001611 GO:0005515
Tsu05g01047 1030 PANTHER LRR RECEPTOR-LIKE KINASE 29 1025 - -
Tsu05g01047 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Tsu05g01047 1030 ProSiteProfiles Protein kinase domain profile. 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01047 1030 SUPERFAMILY L domain-like 42 337 - -
Tsu05g01047 1030 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Tsu05g01047 1030 SUPERFAMILY L domain-like 349 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01047 Tsu-Chr5 9201407 9204709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01047 41 1026 Receptor kinase-like Gene Family AT3G47570 45.537 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01047 Pkinase 5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01047 - - mtr:MTR_5g025930 1358.58