Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01046 ATGAAGTCTTTTTCTTTCCAGTCATCTACACTTTTATACCTTCATCTGCTTTTTCTGTTTACCTTCAATTTAATGTGCTTTGGCCCAAACAATATTGTGGTTGCGGCCGCGATATTAGAAAACCAAACAGATCATTTTACATTGCTCAAATTCAAAGAATCAATATCCAGTGATCCATATACAACTCTTGAATCTTGGAATTCTTCCATCCACTTCTGTAAATGGAGTGGAATCACATGCAACCCCATGCATGAAAGAGTTATAGGGTTGAACCTAATTAAATATCAGTTACATGGATCATTATCTCCCCATATTGGTAATCTTACTTTTCTAAGAAATCTCAACCTTGGAAACAACAGCTTCTATGGAGAAATCCCAAAGGCTTTAGGTCAGTTGCTACAATTGCAACAACTTATTCTCTCCAATAACTCTTTTGTAGGTAAAATTCCTACAAACTTGACATATTGCACCAATCTTAAACAGTTACTCTTGTCTGGAAACAATCTCATTGGTAATATACCAATTGAAATTGGCTCTTTGAAAAAGCTTCAAAGAATGActattaacaaaaacaaattaactgGAGGAATCCCTTCATCCATAGGGAACCTTTCATTCGTAAAGCAGTTAGATTTTGCTCGTAACAACTTAGAAGGAGATATTCCACAAGCAATTTGTCGCCTCAAAAACTTACTGTACTTAAGAGTGGATGTCTTTGAGAATCATTTGTCTGGGGACATTCCTGAAACTATTGGTGAATGCATAAGCTTAGAGCAACTTAGCTTACAAGGGAACTCCTTCGACGGAACAATACCATCCTCTTTCGCATCTCTCAAAGATCtgcaatatttagacctttcaAGAAATCAATTGTCTGGATTAATTCCTGAAGTTCTCCAAAATATCTCTGTTTTAAATCATTTGAATGTATCTTTTAACATGTTGGGTGGTGAGGTACCAACAAATGGTGTCTTTGGAAATGCAACCCAAGTGGCAATGACAGGAAACAATAAGCTTTGTGGAGCCTTACATAGAGGAACCGATGGGTTCTCGGCTAGAAACTTGATAGGCTCAGGAAATTTTGGTTCCGTGTACAAAGGAAATCTTGTGTCAGAAGATAATGTTGTTGCTGTAAAGGTCCTGAACCTCCAAAAAAAGGGAGCTCACAAGAGTTTTATTGTTGAGTGTAATGCGCTCAAAAATATTAGACACCGGAATTTGGTTAAGATTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTCTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAATTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTTCTTCTGGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATATCAAGACTCATCTTAACCATTGGCAATACCTCCCATAAAGATACCAGTACAATTGGAATAAAGGGGACTGTTGGCTATGCTCCTCCAGaGTATGGAATGGGTTCTGAAGTGTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACTGGTAGAAGACCCACAGATGAAACTTTGGATGATGGTCAAAATCTGCATAACTTTGTTGGGATTTCCTTTCCTGATAATCTTATTAAGATTTTAGACCCACGTATTGTATCAAGAGATGATGGAGTTTCGATACAAGATGGAAACAGTGGTAATCTTATTCCGATTGTAGAAGAGTGcttagtttcactttttaaGATTGGACTTGTTTGTTCAATGGAATCACCCaaagaaagaatgaatattGTGGATGTCCATAGAGAGCTTACCATAATCAGAAAGGCCTTTCTCGCCGGTGTTCGCGCTCTTAATTAG 1995 0.3629 MKSFSFQSSTLLYLHLLFLFTFNLMCFGPNNIVVAAAILENQTDHFTLLKFKESISSDPYTTLESWNSSIHFCKWSGITCNPMHERVIGLNLIKYQLHGSLSPHIGNLTFLRNLNLGNNSFYGEIPKALGQLLQLQQLILSNNSFVGKIPTNLTYCTNLKQLLLSGNNLIGNIPIEIGSLKKLQRMTINKNKLTGGIPSSIGNLSFVKQLDFARNNLEGDIPQAICRLKNLLYLRVDVFENHLSGDIPETIGECISLEQLSLQGNSFDGTIPSSFASLKDLQYLDLSRNQLSGLIPEVLQNISVLNHLNVSFNMLGGEVPTNGVFGNATQVAMTGNNKLCGALHRGTDGFSARNLIGSGNFGSVYKGNLVSEDNVVAVKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLSHRLNIIIDVASALHYLHQECEQLVIHCDLKPSNVLLDDDMVAHVSDFGISRLILTIGNTSHKDTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTGRRPTDETLDDGQNLHNFVGISFPDNLIKILDPRIVSRDDGVSIQDGNSGNLIPIVEECLVSLFKIGLVCSMESPKERMNIVDVHRELTIIRKAFLAGVRALN 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01046 664 SMART serkin_6 350 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01046 664 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524
Tsu05g01046 664 Gene3D Ribonuclease Inhibitor 36 98 IPR032675 -
Tsu05g01046 664 Gene3D Ribonuclease Inhibitor 99 342 IPR032675 -
Tsu05g01046 664 PANTHER LRR RECEPTOR-LIKE KINASE 235 342 - -
Tsu05g01046 664 PANTHER LRR RECEPTOR-LIKE KINASE 30 238 - -
Tsu05g01046 664 PANTHER LRR RECEPTOR-LIKE KINASE 343 659 - -
Tsu05g01046 664 Gene3D Transferase(Phosphotransferase) domain 1 432 658 - -
Tsu05g01046 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Tsu05g01046 664 SMART LRR_typ_2 278 301 IPR003591 -
Tsu05g01046 664 SMART LRR_typ_2 108 132 IPR003591 -
Tsu05g01046 664 Pfam Leucine rich repeat 256 315 IPR001611 GO:0005515
Tsu05g01046 664 PANTHER OS04G0122200 PROTEIN 235 342 - -
Tsu05g01046 664 PANTHER OS04G0122200 PROTEIN 30 238 - -
Tsu05g01046 664 PANTHER OS04G0122200 PROTEIN 343 659 - -
Tsu05g01046 664 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Tsu05g01046 664 Gene3D Phosphorylase Kinase; domain 1 343 431 - -
Tsu05g01046 664 Pfam Protein kinase domain 353 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01046 664 SUPERFAMILY Protein kinase-like (PK-like) 342 650 IPR011009 -
Tsu05g01046 664 ProSiteProfiles Protein kinase domain profile. 350 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01046 664 SUPERFAMILY L domain-like 43 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01046 Tsu-Chr5 9191135 9194671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01046 97 662 Receptor kinase-like Gene Family AT3G47090 39.095 1.49e-127 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01046 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01046 - - mtr:MTR_5g025930 621.313