Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01044 ATGAAGccttatattttctttttacctATGTCTTGGTATGTTTACCTTCATCTCTTTACCTTAACCTTAATGTGGTTTGGTTTAAATAGAACTCTGACAGTGGCATTAGGAAACCAAACCGATCATTTGGCCTTGCTCCAATTTAAGCAACTAATATCTAGTGATCCATATGGTATCCTAGATTCTTGGAATAGTTCAACTCACTTTTGCAACTGGCACGGAATCACGTGCAATCCCAAGCATCAAAGAGTTACAAATTTGAAGTTGGAAGGATACAAGTTGCGTGGATCCATATCACCGTATGTTGGCAATCTTTCACATATGAGATCCCTCAACCTTGGACACAACAACTTCTACGGCAACATTCCACAAGAATTGGGTCGTTTGTCAAGATTAAGATATCTTCTTCTGCGCAACAACTTGTTGGTTGGAGAATTTCCAATAAACTTGACAAAGTGTTCGGAGCTAAAAAGCATACGGTTAGATCGAAACAATCTTATCGGAAAAATACCTAGCCAAATTGGTTCTCTCCAAAAGCTTCAAATTTTCTACATGGAACAAAACAATTTATCCGGAAAAATCCCACCATCCATAAAGAATCTTTCATCCCTTACCGGATTTTTGGTGGGTGACAATAACTTGGTGGGAAATATTCCACAAGAGATGTGTTTCTTGAAACAGTTGAAGATTATAGAAATTCATGAAAACAAATTTGTAGGTACATTTCTTTCTTGTCTGCATAATATATCATCTTTTAATGAAATCTCCATTGGAGACAATGAATTTAGTGGCTCTTTTCCACCTAATATGTTCCAcacactccctaatctttattACTTTGAAATTGGAGGAAATCAATTCTCAGGTCCAATCCCAAATTCCATTGCAAATGCTTCTACTTTGACAGTACTTGATATGAGTCACAACCATTTTGTTGGACAAGTTCCATGTCTAGGAAAGCTGCAAAATCTTAAGTGGTTAAATTTTGAAATCAACAATTTAGGTGATAATTCCACTAAGGATTTAGAGTTTTTAAAATCATTAGCAAACTGTAGTAAGTTGCAAGTGCTCTCTATATCCTACAATAATTTTGGAggtattttgaaaaattctatTGGAAATTTATCCACTACTCTTACTAACCTACATTTCGGGGGTAATCAAATATATGGAAAAATTCCTATAGAATTAGGAAATCTAATTGAATTGATTATTTTGAGCATGCTAGAAAACTATTTCGAAAGCACGATTCCAACTACTTTTGGGAAATTTcaaaagatacaatttttagaTATGAGTGTAAACAAATTAACAGGGAATATACCAGCCTTCATAGGAAATCTCAGCCAATTGTATTATTTGCGACTAGATACAAATATGTTTGAAGGGAATGTTCCTCCAAATATAGGAAATTGTCAAAAATTACAATACCTAAATGTTTCACGAAACAATCTTGGAGGATATGTCCCCTTAGAGATCTTCAGTATTCAGTATTTATCAAATTCACTGGACTTGTCACATAACTTATTGAGTGGTACCTTACCAAAAGAAGTGGGTATGCTAAAAAATATAGATTGGCTAGATGTCTCTGAGAATCATTTGTCCGGGGATATTCCTAGAACCATTGGTGATTGCATAAGTTTAGAGTACATTCATTTGCAAGGGAACTCCTTCAATGGAACAATACCAGCCTCTTTAGCTTCTCTCAAAGGTCTTAAATATTTAGACCTTTCAAGAAATCGATTGTCTGGATCAATTCCTGATGTTATccaaaatatatcttttttagaACATTTGAATGTATCTTTTAACATGTTGGAAGGTGAGGTACCGACCGATGGTGTCTTTGGAAATGCAACTAAAGTAGCATTGATTGGAAACAATAAGCTTTGTGGAGGTATTTCACAGATGCATCTACCACCGTGTCCTATCACGCATAGGAAACATGCAAAACAACATAAAGTCAAGTTGATAGTTGTGATAGTTAGTGTGGTTTCTTTTCTAttcatacttttatttatcataaTTATCTACTGGACGAGGAAAAGAAATCAAAAACGATCTTTTGATTCACAAACAATTGATCAACTAACTAAGGTTTCATACCAAGCCTTACATCGAGGAACTGATGGGTTCTCGACTAGAAACTTGATAGGCTCGGGAAGTTTTGGTTCTGTGTACAGAGGAAATCTTATGTCAGAAGTTAATGTTGTTGCTGTAAAGGTCCTGAACCTCCAAAAGAAGGGAGCTCACAAGagtttcattgctgaatgtaaTGCGTTAAGAAATATCAGACACCGAAATTTAGTTAAGATTTTAACATGCTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAATTTTCGATTACATGAAAAATGGAAGCTTAGAAAAATGGTTGCATCCAGATATTTTAAATGCAGAGCCTCCAACAACCTTGGTTCTCCATCAGAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCGAGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGACGATGACATGGTTGCTCGTGTGAGTGATTTTGGCATAGCAAGACTTGTCTCGGTCATTGGTGATACCTCTCATAAAGATACTAGTACAATTGGAATAAAAGGAACCATTGGTTATGCCCCTCCTGAGTATGGAATGGGATCTGAGGTGTCAATTGAAGGTGATATGTATAGCTTTGGAATATTGGTATTAGAAATGTTAACCGGAAAAAGACCAACAGATGAAATGTTCAAAGATGATCATAATCTCCATAATTATGTGAAACATTCAATTCCAAATCACCTTTTCCAGATTGTGGACCAGTCTATTCTAGATCTCCCCATTGAATTAGACCACAATACTGACAATGGGAACTTTGGTGGTATACATCCTAATGTAGAGAAATgtttactttcaatttttagTATTGGACTTTCTTGTTCAGTGGAATCaccaaaagaaagaatgaatatGGTTGATGTTATAAGGGAGCTCAATATCATTAAAAGTTTCTTTCCTACTGATGCTCAATAA 3078 0.3385 MKPYIFFLPMSWYVYLHLFTLTLMWFGLNRTLTVALGNQTDHLALLQFKQLISSDPYGILDSWNSSTHFCNWHGITCNPKHQRVTNLKLEGYKLRGSISPYVGNLSHMRSLNLGHNNFYGNIPQELGRLSRLRYLLLRNNLLVGEFPINLTKCSELKSIRLDRNNLIGKIPSQIGSLQKLQIFYMEQNNLSGKIPPSIKNLSSLTGFLVGDNNLVGNIPQEMCFLKQLKIIEIHENKFVGTFLSCLHNISSFNEISIGDNEFSGSFPPNMFHTLPNLYYFEIGGNQFSGPIPNSIANASTLTVLDMSHNHFVGQVPCLGKLQNLKWLNFEINNLGDNSTKDLEFLKSLANCSKLQVLSISYNNFGGILKNSIGNLSTTLTNLHFGGNQIYGKIPIELGNLIELIILSMLENYFESTIPTTFGKFQKIQFLDMSVNKLTGNIPAFIGNLSQLYYLRLDTNMFEGNVPPNIGNCQKLQYLNVSRNNLGGYVPLEIFSIQYLSNSLDLSHNLLSGTLPKEVGMLKNIDWLDVSENHLSGDIPRTIGDCISLEYIHLQGNSFNGTIPASLASLKGLKYLDLSRNRLSGSIPDVIQNISFLEHLNVSFNMLEGEVPTDGVFGNATKVALIGNNKLCGGISQMHLPPCPITHRKHAKQHKVKLIVVIVSVVSFLFILLFIIIIYWTRKRNQKRSFDSQTIDQLTKVSYQALHRGTDGFSTRNLIGSGSFGSVYRGNLMSEVNVVAVKVLNLQKKGAHKSFIAECNALRNIRHRNLVKILTCCSSTDYKGQEFKALIFDYMKNGSLEKWLHPDILNAEPPTTLVLHQRLNIIIDVASALHYLHRECEQLVLHCDLKPSNVLLDDDMVARVSDFGIARLVSVIGDTSHKDTSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGKRPTDEMFKDDHNLHNYVKHSIPNHLFQIVDQSILDLPIELDHNTDNGNFGGIHPNVEKCLLSIFSIGLSCSVESPKERMNMVDVIRELNIIKSFFPTDAQ 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01044 1025 SUPERFAMILY L domain-like 39 334 - -
Tsu05g01044 1025 SMART serkin_6 712 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01044 1025 Gene3D Ribonuclease Inhibitor 252 643 IPR032675 -
Tsu05g01044 1025 Gene3D Transferase(Phosphotransferase) domain 1 794 1020 - -
Tsu05g01044 1025 Pfam Leucine Rich Repeat 353 375 IPR001611 GO:0005515
Tsu05g01044 1025 Pfam Protein kinase domain 714 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01044 1025 ProSiteProfiles Protein kinase domain profile. 712 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01044 1025 PANTHER LRR RECEPTOR-LIKE KINASE 26 1022 - -
Tsu05g01044 1025 SMART LRR_sd22_2 177 203 - -
Tsu05g01044 1025 SMART LRR_sd22_2 569 595 - -
Tsu05g01044 1025 SUPERFAMILY L domain-like 377 632 - -
Tsu05g01044 1025 Gene3D Ribonuclease Inhibitor 37 188 IPR032675 -
Tsu05g01044 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Tsu05g01044 1025 PANTHER OS04G0122200 PROTEIN 26 1022 - -
Tsu05g01044 1025 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Tsu05g01044 1025 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Tsu05g01044 1025 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Tsu05g01044 1025 Gene3D Phosphorylase Kinase; domain 1 676 793 - -
Tsu05g01044 1025 SUPERFAMILY Protein kinase-like (PK-like) 687 1015 IPR011009 -
Tsu05g01044 1025 Gene3D Ribonuclease Inhibitor 189 251 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01044 Tsu-Chr5 9099087 9185547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01044 38 1020 Receptor kinase-like Gene Family AT3G47570 46.881 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01044 Pkinase 5.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01044 - - mtr:MTR_5g025930 1409.05