Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01041 ATGATGTCTTTTTCTTCCTTGTCACCTACACTTCTATACCTTCATCTCCTTTTCCTGTTTACCTTAAATTTAATGTGCTTCGACCCAAACAAAATTGTGGCAGTGGCTGCAATATTAGGAAACCAAACAGATCATTTTGCATTGCTTAAATTCAAAGAATCAATATCCAGTGATCCATATAAAACTCTTGAATCTTGGAATTCTTCTATCCACTTCTGCAATTGGCATGGAATCACATGCAGCCCCATGTATCAAAGAGTTATAGTGTTGAACCTAGGAGGATATCGTTTACACGGATCTTTATCTCCCTATGTTGGCAATCTCACCTTTTTGATAAATCTCAACCTTAGAAACAACAACTTCTTTGGAGAAATCCCACAGGAGTTGGGTCAATTGCTACAATTGCAACAACTTTATCTTAACAATAACTCATTTGCAGGTGAAATTCCTACAAACCTTGCATATTGTTCCAATCTCAAAGACCTATACTTGGACGCAAACAATTTGATTGGCaaaataccaattgaaattggCTCTCTggaaaaacttcaatttttgaGCTTATGGAAAAACAACTTAAGTGGAAAATTCCCTTCATTCATAGGGAATTTGTCGAGCTTAAAAGGTTTTACATTTGCTTATAACAACTTAGAAGGAGATATTCCACAAGAAATATGTCGCCTCAAAAACTTGTCATTTTTACTTGTCGCCAGCAATAATTTGTCCGGTACAATTCCTTCTTGTATTTACAATATCTCATCACTTACTTACTTGTCAATAGCAGAGAACAACTTTCATGGCTCTCTTCCACCCAACATGTTCCACACCCTCCCAAATCTCCAAAATGTTGAAATTGGAGCAAATCAATTTTCAGGCTCAATCCCCACTTCCATAATAAATGCAACATCTCCCATTATGTCATTTGATATCAGTCGAAATTATTTTGTCGGACAAGTTTCAACTCTAGGAACACTAAAAGATTTACAACTTCTGAATTTGGAAGAAAACAATTTAGGTGACAGCTCAACTGaggatttgaaatttttaaaatctttgaCAAATTGTAGTAAGTTGCAAGTGCTTTctatatatcataataattttgGAGGTAATTTGCCAAATTCCATAGGTAATCTATCTCCGAAACTTATTCAACTACATCTTGGGAATAATCAGATATCAGGTAAAATTCCTGAACAGTTAGGAAATCTAATTGGCTTAATTTTCTTGGACCTGGGTTCTAACCACTTTGAAGGAAACATTCCAACTACTTTTGGAAAATTCCAAAAGATGCAAAAATTAGGATTGAGCAGAAACAAGTTATCAGGACATATACCATCCTTCATAGGAAATCTCAGTCAATTGTATCTTTTGGATTTACAACTTAATATGTTAGAAGGAAATATTCCTCCAAACGTAGGAAACTGTCAAAAGTTACAATATCTAGATCTTTCTCAGAATAAGCTTAGTGGAACCATACCTTTAGagatttttaatcttttttctcTGTCAAACTTATTGGACTTGTCACAAAACTCTTTGACCGGTAGCTTGCCAAAAGAAGTGGGTTTacttaaaaatattgatatgcTAGATGTCTCTGAGAATCACTTGCTTGGTGATATTCCTAAGACCATTGGTGAATGCACAAGTTTAGAATACCTTCAATTGCAAGGGAACTCCTTCTGTGGAACAATACCTTCTTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACCTTTCAAGAAATCGATTGTTTGGATCAATTCCTAATGTCATTCAAAATATCTCTGATTTAGAATATTTTAATGTTTCTTTTAACATGTTGGAAGGTGACATACCAAAAGACGGTATTTTTCGAAATGCAACCCAAGTAGCAATTACTGGAAATCATAAGCTTTGTGGAGGTATTTCACAACTGCATCTACCATCATGCGCTATCAAAGATATGAAACATTCAAAACACCATAAATTCAAATCGATAGCTATGATAGTTAGTGtggtttcttttcttctcataatttcttttattatagTTATCTACTGGATgaggaaaagaaataaaaaaaaatattttgattcacCAACAGCTGATCAACTAACTAAGGTTTCATACCAAGACTTACATCGAGGAACCAATGGTTTCTCGCCTAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAGAGGGAATCTTGTGTCAAATGATAATCTCGTTGCCATAAAGGTCCTAAACCTCCAAAAGAAGGGAGCAGCCAAGAGTTTCACTGTTGAATGTAATGCACTCAAAAATATTAGACACCGAAATTTGGTTAGGATTTTAACATGTTGTTCTAGTACAGATTACCAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCCGAGATTTTAAATGCAGAGCATCCAACAACATTGGATCTCAGTAATAGATTAAACATCATTATCGATGTTGCTTCTGCATTACATTATCTTCACCAAGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTTAGTGATTTTGGCATAGCAAGACTTGTCTTAGCCATTGGCGGTATATCTCATATGAATACTAGTACAATCGGAATAAAAGGGACGGTTGGCTATGCTCCACCAGAATACGGAATGGGTTTTGAAGTTTCCACATGTGGTGACATGTATAGCTTTGGAATCTTGGTTTTGGAAATGCTTACCGGTAGAAGACCTACTGATGAAATGTTTGAAGATGGTCAAAATCTGCATAAATTTGTTTCGATTTCATTTCCTGATAATCTTATAAAGGTTTTGGACCCACATCTTGTATCAAGAGATGCAAAAGTAGTAATAGAAGATGGAAACAATGAGAATCTTATTCTAAGTGTAGAGGAGTGGTTAGTTTCACTTTTTAAGATTGGACTTGCTTGTTCAATAGAATCACCGAAAAAAAGATTGAATATTGTGGATGTTAATAGAGAGCTTAGCAAAATTAGAAAGGCCTTTCTTGCCGGTTCGCACTCATAA 3087 0.3375 MMSFSSLSPTLLYLHLLFLFTLNLMCFDPNKIVAVAAILGNQTDHFALLKFKESISSDPYKTLESWNSSIHFCNWHGITCSPMYQRVIVLNLGGYRLHGSLSPYVGNLTFLINLNLRNNNFFGEIPQELGQLLQLQQLYLNNNSFAGEIPTNLAYCSNLKDLYLDANNLIGKIPIEIGSLEKLQFLSLWKNNLSGKFPSFIGNLSSLKGFTFAYNNLEGDIPQEICRLKNLSFLLVASNNLSGTIPSCIYNISSLTYLSIAENNFHGSLPPNMFHTLPNLQNVEIGANQFSGSIPTSIINATSPIMSFDISRNYFVGQVSTLGTLKDLQLLNLEENNLGDSSTEDLKFLKSLTNCSKLQVLSIYHNNFGGNLPNSIGNLSPKLIQLHLGNNQISGKIPEQLGNLIGLIFLDLGSNHFEGNIPTTFGKFQKMQKLGLSRNKLSGHIPSFIGNLSQLYLLDLQLNMLEGNIPPNVGNCQKLQYLDLSQNKLSGTIPLEIFNLFSLSNLLDLSQNSLTGSLPKEVGLLKNIDMLDVSENHLLGDIPKTIGECTSLEYLQLQGNSFCGTIPSSLASLKGLRYLDLSRNRLFGSIPNVIQNISDLEYFNVSFNMLEGDIPKDGIFRNATQVAITGNHKLCGGISQLHLPSCAIKDMKHSKHHKFKSIAMIVSVVSFLLIISFIIVIYWMRKRNKKKYFDSPTADQLTKVSYQDLHRGTNGFSPRNLIGSGSFGSVYRGNLVSNDNLVAIKVLNLQKKGAAKSFTVECNALKNIRHRNLVRILTCCSSTDYQGQEFKALVFDYMKNGSLEQWLHPEILNAEHPTTLDLSNRLNIIIDVASALHYLHQECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLVLAIGGISHMNTSTIGIKGTVGYAPPEYGMGFEVSTCGDMYSFGILVLEMLTGRRPTDEMFEDGQNLHKFVSISFPDNLIKVLDPHLVSRDAKVVIEDGNNENLILSVEEWLVSLFKIGLACSIESPKKRLNIVDVNRELSKIRKAFLAGSHS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01041 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Tsu05g01041 1028 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Tsu05g01041 1028 SUPERFAMILY L domain-like 381 636 - -
Tsu05g01041 1028 PANTHER LRR RECEPTOR-LIKE KINASE 29 1023 - -
Tsu05g01041 1028 Gene3D Ribonuclease Inhibitor 157 352 IPR032675 -
Tsu05g01041 1028 SMART serkin_6 716 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01041 1028 SMART LRR_typ_2 452 476 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 477 500 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 132 156 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 525 549 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 573 596 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 381 404 IPR003591 -
Tsu05g01041 1028 SMART LRR_typ_2 252 276 IPR003591 -
Tsu05g01041 1028 Gene3D Transferase(Phosphotransferase) domain 1 798 1024 - -
Tsu05g01041 1028 PANTHER OS04G0122200 PROTEIN 29 1023 - -
Tsu05g01041 1028 SUPERFAMILY Protein kinase-like (PK-like) 691 1014 IPR011009 -
Tsu05g01041 1028 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Tsu05g01041 1028 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Tsu05g01041 1028 PRINTS Leucine-rich repeat signature 573 586 - -
Tsu05g01041 1028 PRINTS Leucine-rich repeat signature 479 492 - -
Tsu05g01041 1028 SUPERFAMILY L domain-like 42 338 - -
Tsu05g01041 1028 Pfam Protein kinase domain 720 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01041 1028 Gene3D Ribonuclease Inhibitor 353 647 IPR032675 -
Tsu05g01041 1028 ProSiteProfiles Protein kinase domain profile. 716 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01041 1028 Gene3D Ribonuclease Inhibitor 43 156 IPR032675 -
Tsu05g01041 1028 Gene3D Phosphorylase Kinase; domain 1 679 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01041 Tsu-Chr5 9057734 9061021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01041 41 1028 Receptor kinase-like Gene Family AT3G47570 46.547 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01041 Pkinase 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01041 - - mtr:MTR_5g025930 1323.92