Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01035 ATGTTGCATGCATTTTTCTCTATATGTCTTAACATATTACTTTGctttttcacaaataaaactacTTATGCATTAGGAAATGATAGTGATTATTTAGCATTGCTTAAATTCAAGGAATCAATATCCAAAGACACAAATAAAATCTTAGACTCATGGAATAGTTCTACACAATTTTGCAAGTGGCATGGAATCACATGCATGAATCAAAGAGTTATAGAGTTGAAACTAGAAGGATATCAATTGCATGGAACCATATCACCTTATATTGGTAATCTCTCTTTTCTAACAAACTTTAATCTCATGAACAATAGTTTCTATGGAACAGTTCCACAAGAATTGTTTCATTTAGTAAAACTACAAAATCTTTACCTCACTAATAATTCATTGGTTGGTGAAATTCCTACAAACTTTTCAAGTTTGTTGAATCTCAAAAGCTTATTCTTGCAAGGGAATAATCTTGTTGGTAAAATACCAAATGAAATTGGTTCTCTTAGGAAGCtacaaaaaatgaatatttggaACAATAATTTAACAGGTGAAATTCCATCATTTATAGGAAATCTTTCatatcttataaattttaatgttgGTTCCAATAACTTAGAGGGTAATATTCCACAAGATATATGTCATTTGAAGAATTTAGAAACTTTATCATTAGGTATAAACAAATTATCTGGTAAACTTCCACTTTGTCTTTTCAATATGTCATCTCTTACTCTAATTGCTGTtgacttaaacaaatttaatgGCTCTCTTCCACCAAATTTGTTCCATACTCTTCCGAATCTCGAAACACTTTTCATTGGTGGGAATCAAATCTCCGGTCTAATCCCGGCTTCCATTACAAATGCATCTGGCCTAAGAGCATTTGATATCACTGTAAACAAATTCATTGGTCAAGTTCCAAGTCTTAGGAAGCTAAAAGATCTTCATCTCCTAGGTTTGTCTCAGAACAATCTTGGAAGCAACTCTAGTAATGATTTGGACTTTGTAGAGTCATTGGAAAATTGTAGTAAGTTGTATGTGATTGATATATCTTACAATAATTTTGGAGGTTCTTTACCTAATTCCTTGGGAAATATGTCTAACAAACTCAATAGCCTATATCTTGGGGGGAATCATATATCAGGAAAAATTCCGGCAGAATTAGGAAATCTAGTTAACTTATATCTCTTAACCGTGGAAGATAACCATTTTGAAGGAACGATTCCTGATACTTTCGCGAAGTTTCAAAAGTTGCAAGTGTTAGAATTGAGTGGAAACCGGTTGTCGGGAAATATACCAGCCTTTATAGGCAACCTCAGTCAGTTGTTTTATTTGGGTTTAGGACATAATATGTTAGAAGGAAATATTCCTCGAAGTATAGGAAATTGCCAAAAGTTATATCACTTAGACTTTTCGCTAAATAATCTTAGAGGAACCATACCGATAGAGGTTTTTAGTCTCTTTTCGTTAACAAAATTATTGGACTTGTCGGGAAACTCATTGAGCGGTAGTCTACCGCAGGAAGTAGGCAAGCTAGAATATACCGAAATGCTGAATTTCTCTGAGAATCATTTGTCTGGTGATATTCCTGGAACCATTGGAGAATGCATAAGCTTAGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGAGTCATACCAGCCTCTTTGGCTTCACTAAAAGGTCTTCAACGATTAGACCTATCACGAAACCGCTTATCTGGATCAATTCCTAAAGGTATACAAAATATTTCTTTCCTACAATACTTCAATGTATCTTTTAACATGTTGGAAGGTGAGGTACCAACTGAAGGTGTCTTTCTAAATGCAACTGAGGTGGCGGTAACGGGAAACAATAACCTCTGTGGAGGTATTTCAAAACTGAACCTACCTCCATGCCCCTTAAAAGGAAATAAACACGAAAAACATCACGATTTCAAGTTGATAGCAGTGATAGTTAGTGTGGTTTGTTTTCTTCTTATACTTCTAATTATCTTAACTATCTACTGtatgagaaaaagaaacaagacACCTTCTTTTGAGTCGCCGACAATTGGCCGTATGGTTAAGATTTCATATGAAGACTTGTACAATGGAACCGACGGATTCTCAACAAGAAACTTGATAGGATCTGGAAATTTTGGCTCTGTCTACTTAGGAAGTCTTGAGTCGGAGGATAAAGTTGTAGCCATAAAGGTtctaaaacttcaaaagaagGGAGCTCACAAGAGTTTCATTGCTGAATGCAACGCGCTCAGAAACATTAGACACCGAAATTTGGTTAAGATTTTGACAAGTTGTTCTAGTACAGATTTCAAAGGTCAAGAATTCAAAGCTCTTGTTTTCGAGTACATGAAAAATGGAAACTTAGAAAGTTGGTTGCATCCATCAAAAGAAATTGCAGGTACACAAAATACATTGAACCTTGCACAAAGGTTAAGTATTATTATTGATGTTGCTTCGGCATTTCATTACCTTCATCATGAATGTGAGCAACCTGTTATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGATTCTATGGTAGCTCATGTGAGTGATTTTGGCATAGCGAGATTGCTCCCGAGTATTGGAGTCTCGTTGATGCAAAATAGCACAGTTGGAATAAAGGGGACTATTGGTTATGCTCCTCCAGAATATGGAATGGGATCTAAGTTATCAATTGAAGGCGATATGTATAGCTTTGGAATTCTAGTTTTAGAAATGTTAACCGGAAGAAGACCTACTGACGAAATGTTTGAAGACAGTCATAGTCTTCACAATTTCGTCAAAATTTCGATTTCAAATGACCTTTTGCAGATTGTAGATCCAACCATTGTCCACAATGAATTGGAACGGGCTACTGACAGTGAGAATATTGGCGTTATGCATTCTAACGCAGAGAAATGCCTATTTTCGCTTTTTAGTATTGGACTTGCTTGTTCAGTAGAATCGCCGAAAGAAAGAATGAAGCATCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCAAGAATGTGAGCAAATGACTTGTCTCGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCTAGACTTGTCTCAGCCATTGGCGGTACCTCTCATAAGAATACGAGTACAATTGAATTAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGAGATGGGTTATGAAGTGTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACTGGTAGAATACCCACTGATGAAGTTTTCAAAGATGGTCAAAATCTGCATAACTTTGTTGAAATTGCATTTCCTGATAATCTTATGAAGATTTTGGACCCACATCTTGTATCAAGGGATGCAGAAGTAGAAATGCAGGATGGAAATGGTGCCAATCTTATTCCAAGTGTAGAGGAGTGCTTAGTTTCGCTTTTTAGGATTGGACTTATTTGTTTGGAATTACCgaaagaaagaatgaatattGCGGATGTCACTGGAGAgcttagaaaaataaaaaaggccTTTCTCTCCGGTGTTCCCGCTCATAATTAG 3576 0.3476 MLHAFFSICLNILLCFFTNKTTYALGNDSDYLALLKFKESISKDTNKILDSWNSSTQFCKWHGITCMNQRVIELKLEGYQLHGTISPYIGNLSFLTNFNLMNNSFYGTVPQELFHLVKLQNLYLTNNSLVGEIPTNFSSLLNLKSLFLQGNNLVGKIPNEIGSLRKLQKMNIWNNNLTGEIPSFIGNLSYLINFNVGSNNLEGNIPQDICHLKNLETLSLGINKLSGKLPLCLFNMSSLTLIAVDLNKFNGSLPPNLFHTLPNLETLFIGGNQISGLIPASITNASGLRAFDITVNKFIGQVPSLRKLKDLHLLGLSQNNLGSNSSNDLDFVESLENCSKLYVIDISYNNFGGSLPNSLGNMSNKLNSLYLGGNHISGKIPAELGNLVNLYLLTVEDNHFEGTIPDTFAKFQKLQVLELSGNRLSGNIPAFIGNLSQLFYLGLGHNMLEGNIPRSIGNCQKLYHLDFSLNNLRGTIPIEVFSLFSLTKLLDLSGNSLSGSLPQEVGKLEYTEMLNFSENHLSGDIPGTIGECISLEYLYLQGNSFHGVIPASLASLKGLQRLDLSRNRLSGSIPKGIQNISFLQYFNVSFNMLEGEVPTEGVFLNATEVAVTGNNNLCGGISKLNLPPCPLKGNKHEKHHDFKLIAVIVSVVCFLLILLIILTIYCMRKRNKTPSFESPTIGRMVKISYEDLYNGTDGFSTRNLIGSGNFGSVYLGSLESEDKVVAIKVLKLQKKGAHKSFIAECNALRNIRHRNLVKILTSCSSTDFKGQEFKALVFEYMKNGNLESWLHPSKEIAGTQNTLNLAQRLSIIIDVASAFHYLHHECEQPVIHCDLKPSNVLLDDSMVAHVSDFGIARLLPSIGVSLMQNSTVGIKGTIGYAPPEYGMGSKLSIEGDMYSFGILVLEMLTGRRPTDEMFEDSHSLHNFVKISISNDLLQIVDPTIVHNELERATDSENIGVMHSNAEKCLFSLFSIGLACSVESPKERMKHPTTLDLSHRLNIIIDVASALHYLHQECEQMTCLDMVAHVSDFGIARLVSAIGGTSHKNTSTIELKGTVGYAPPEYEMGYEVSTCGDMYSFGILMLEMLTGRIPTDEVFKDGQNLHNFVEIAFPDNLMKILDPHLVSRDAEVEMQDGNGANLIPSVEECLVSLFRIGLICLELPKERMNIADVTGELRKIKKAFLSGVPAHN 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01035 1191 Gene3D Phosphorylase Kinase; domain 1 682 780 - -
Tsu05g01035 1191 PANTHER LRR RECEPTOR-LIKE KINASE 990 1186 - -
Tsu05g01035 1191 PANTHER LRR RECEPTOR-LIKE KINASE 17 990 - -
Tsu05g01035 1191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Tsu05g01035 1191 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Tsu05g01035 1191 Gene3D Ribonuclease Inhibitor 27 307 IPR032675 -
Tsu05g01035 1191 Pfam Protein kinase domain 701 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01035 1191 PANTHER OS04G0122200 PROTEIN 17 990 - -
Tsu05g01035 1191 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Tsu05g01035 1191 SUPERFAMILY L domain-like 28 321 - -
Tsu05g01035 1191 SMART LRR_sd22_2 261 287 - -
Tsu05g01035 1191 SMART LRR_sd22_2 411 437 - -
Tsu05g01035 1191 SMART LRR_sd22_2 556 582 - -
Tsu05g01035 1191 SMART LRR_sd22_2 212 227 - -
Tsu05g01035 1191 SMART LRR_sd22_2 116 142 - -
Tsu05g01035 1191 SUPERFAMILY L domain-like 365 619 - -
Tsu05g01035 1191 ProSiteProfiles Protein kinase domain profile. 699 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g01035 1191 PANTHER OS04G0122200 PROTEIN 990 1186 - -
Tsu05g01035 1191 Pfam Protein tyrosine and serine/threonine kinase 990 1099 IPR001245 GO:0004672|GO:0006468
Tsu05g01035 1191 SUPERFAMILY Protein kinase-like (PK-like) 673 988 IPR011009 -
Tsu05g01035 1191 SUPERFAMILY Protein kinase-like (PK-like) 990 1172 IPR011009 -
Tsu05g01035 1191 Pfam Leucine rich repeat 389 448 IPR001611 GO:0005515
Tsu05g01035 1191 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Tsu05g01035 1191 Gene3D Ribonuclease Inhibitor 321 638 IPR032675 -
Tsu05g01035 1191 Gene3D Transferase(Phosphotransferase) domain 1 781 990 - -
Tsu05g01035 1191 Gene3D Transferase(Phosphotransferase) domain 1 991 1185 - -
Tsu05g01035 1191 SMART LRR_typ_2 411 435 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 483 508 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 140 164 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 556 579 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 261 284 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 212 236 IPR003591 -
Tsu05g01035 1191 SMART LRR_typ_2 116 139 IPR003591 -
Tsu05g01035 1191 SMART serkin_6 699 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01035 Tsu-Chr5 9024944 9031003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01035 22 988 Receptor kinase-like Gene Family AT3G47570 46.341 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g01035 Pkinase 7.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01035 - - gmx:100792724 1301.58