Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01008 ATGCCACAAAATTGCATAGCACCAAAACCTGAATACTGTAATAGTACTCTCTCTTTGGAAGGATCACCACCTATGACTGATCCTCATAGCTCAAACAATGAACAATCATTACCAAAACTCATTATGTATCCCATAACTTTAAAGTTTGAGGACTTGGTATACAAAGTGAAAgtaaaccaaaaagaaaaaactatacTGAATGGAATCACTGGTGTGGTGCGCCCAGGAGAAATACTAGCTATGTTAGGACCATCAGGAAGTGGCAAAACCACACTCCTTACAGCTCTCGGAGGCCGTTTAGCCGGCAAACTAACCGGAAAAACCACATACAACAATCAACCTTTCTCAGGTTCAATAAAAAGAAGAACAGGTTTTGTAGCTCAAGATGATGTTCTTTACCCTCACTTAACCGTAACGGAAACTCTAGTGTTCACTGCACTTTTGAGGCTTCCACGAACCTTAACAAGAGATGAAAAAGTTGAACATGTTGAAAGAGTTATAACTGAGTTAGGACTAATTAATTGTAGGAATAGTATGATTGGAGGACCACTTTTAAGAGGTATATCAGGTGGTGAAAAAAGAAGAGTGAGTATAGGACAAGAAATGTTGATTAATCCAAGTTTATTGTTGCTTGATGAACCTACTTCTGGTTTGGATTCTACAACAGCTTTAAGGATCTTGAACACTATAAAAAAACTTGCTAGTGGTGGTAGAACTGTTGTCACAACAATTCATCAACCTTCAAGTAGACTCTACTATATGTTTGATAAGGTTGTGTTACTATCTGAAGGGTGTCCTATCTATTATGGTCCTGCTTCAACTGCTCTTGAATATTTCTCATCTGTTGGTTTCTCAACTAGCATGACTGTTAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCTCCAGACTCTAAGCATGTAACTGAACAAAGTGAGGCTTTGGAACATGAGAGGAAGATTGTGAGAGAATCACTTATTTCTGCTTATGACAAGAACATAGCCACAAGGCTAAAAGCTGAAGTTTCTAGCATGGAAGTGAACAACTACAACAATATCAGAAAAGATGCTTGCACAAGGAATCAAATGAAACCAGAACAATGGTGTACAACCTGGTGGTATCAGTTCACTGTATTATTACAAAGGGGAGTAAGGGAAAGAAGACATGAAGCCTTCAATAGGCTTAGAATATTCCAAGTCATAAGTGTAGCTTTTCTAGCTGGACTCTTATGGTGGCATACACCAGAATCACACCTTGAAGATAGGACAGCTTTGCTATTTTTCTTTGCTGTGTTTTGGGGATTCTATCCTCTCTACAATGCAGTTTTCACATTTCCACAAGAACGAAGAATGCTTATAAAGGAACGATCCTCCGGAATGTACCGCCTTTCTTCCTACTTTCTAGCAAGAACAATAGGAGACTTACCACTAGAGCTAGCACTTCCAACAGCATTTGTCATCATATTATATTGGATGGGAGGATTAAAACCTGATCTTGTAACTTTCATCCTTTCACTTCTTGTTGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTAGGATTAGCATTTGGTGCTATTTTGATGGAGATTAAACAAGCAACTACACTAGCTTCTGTTACAACACTTGTTTTTCTCATTGCTGGAGGTTACTATATACAACAGATTCCACCTTTTATAGTCTGGCTTAAGTACTTAAGCTATAGTTACTACTGTTACAAGCTTCTACTTGGTGTTCAATACAGTGAAAATGATTATTATCAATGCTCAAATGGAGAGTTGTGCAAGGTTATGGACTTTCCTCCAATTAAATCAATGGGATTGAATAATATGTGGGTTGATGTCTCCATCATGGCTTTGATGTTGGTAGGTTATAGATTAGTAGCTTATTTTGCACTTCATAGAGTTAGGTAA 1917 0.3761 MPQNCIAPKPEYCNSTLSLEGSPPMTDPHSSNNEQSLPKLIMYPITLKFEDLVYKVKVNQKEKTILNGITGVVRPGEILAMLGPSGSGKTTLLTALGGRLAGKLTGKTTYNNQPFSGSIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPRTLTRDEKVEHVERVITELGLINCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTSMTVNPADLLLDLANGIAPDSKHVTEQSEALEHERKIVRESLISAYDKNIATRLKAEVSSMEVNNYNNIRKDACTRNQMKPEQWCTTWWYQFTVLLQRGVRERRHEAFNRLRIFQVISVAFLAGLLWWHTPESHLEDRTALLFFFAVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIILYWMGGLKPDLVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYSENDYYQCSNGELCKVMDFPPIKSMGLNNMWVDVSIMALMLVGYRLVAYFALHRVR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01008 638 Gene3D - 46 283 IPR027417 -
Tsu05g01008 638 CDD ABCG_EPDR 44 270 - -
Tsu05g01008 638 Pfam ABC transporter 66 216 IPR003439 GO:0005524
Tsu05g01008 638 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524
Tsu05g01008 638 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 20 636 - -
Tsu05g01008 638 SMART AAA_5 75 265 IPR003593 -
Tsu05g01008 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 281 IPR027417 -
Tsu05g01008 638 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 288 IPR003439 GO:0005524
Tsu05g01008 638 MobiDBLite consensus disorder prediction 16 35 - -
Tsu05g01008 638 Pfam ABC-2 type transporter 376 582 IPR013525 GO:0016020|GO:0140359
Tsu05g01008 638 Pfam ABC-2 type transporter 245 326 IPR043926 GO:0140359
Tsu05g01008 638 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01008 Tsu-Chr5 8733583 8736358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01008 45 264 Calmodulin-binding Proteins AT2G36910 28.070 1.19e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01008 K05681 - gmx:100794774 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01008 05 8733583 8736358 Tsu05g01008 05 8733583 8736358 ECH