Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01003 ATGGGGAGTGACCCTTGGAAGGCCCATTTGGGCATGGCAGTGGTTCAACTATTCAATGGTGGCTACCATGTTATTACTAAAGTGGCCCTTAATGCTGGAGTTAACCAATTAGTTATCTGCTTTTATAGGGATCTTCTTGCTCTCTTCATTCTTTCTCCCATAGCTTTCTTCAAAGAAAGACAGACAAGGCCACCCATTACTAAACAGCTAATAATGACATTCTTCTTTCTTGGATTAACTGGGATATTTGGAAACCAGCTGTTGTTTCTGATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTTTACAACCAGCTATTCCTGTATTTACCTTTCTGCTTGCTGTGATCATGGGTGTAGAAAGAGTGAATTTGCAGAGTTTTGAAGGTCTAGCAAAGGTTGGAGGAACTATTGTATGTGTTTCGGGTGCCATATTGATGGTTTTGTATCGCGGTCCATCTTTGATTGGTTATACAGAACTGATCATTATACCACAGAATGAAATAAGAGTCACTGGTCAGCCAGAGCCTTCTGGATGGTTGATTACTGGTTTACAGGATCTTGGAATTGATAATTTTCAAGTCGGAGTTGTGTTCTTGATAGGAAACTGCATGTGCATGGCTGCTTTCCTAGCCATCCAGGCACCGGTATTAAAAAAGTATCCTGCAAATCTATCTTTGACAGCATATTcattcttctttggagttgtaCTAATGGCGATAGTCTCATTATTCATGACTGATTTGTCAAGTGACTGGATTTTGACACAATCAGAAATACTTGCGGTTGTTTATGCTGGAACTATTACATCTGCCTTTAACTACGGAGTCATTAGTTGGTGCAACAAGATATTGGGACCAGCTTTAGTTGCCCTATACAATCCACTTCAACCTGGTTTTTCTGCCCTTCTGTCTCAGATATTCCTTGGAAGTCCAATTTACCTTGGAAGTATCATAGGGGGGTCTTTGATCATTGCTGGTCTTTATACCGTTACCTGGGCATCTCATAAAGAAAAACAAGCAACTGTTGGAATTACTTCTGATGGCTCTTTGGTCTCGGAACCACTTATTATTCATGACAAAAGTGCACAACAAAGTGCGCATATATTTTCGGGGTCCTCTAACACATCTCCAAACCCGAAATCATATGATTAA 1158 0.3955 MGSDPWKAHLGMAVVQLFNGGYHVITKVALNAGVNQLVICFYRDLLALFILSPIAFFKERQTRPPITKQLIMTFFFLGLTGIFGNQLLFLIGLSYTNPTYAAALQPAIPVFTFLLAVIMGVERVNLQSFEGLAKVGGTIVCVSGAILMVLYRGPSLIGYTELIIIPQNEIRVTGQPEPSGWLITGLQDLGIDNFQVGVVFLIGNCMCMAAFLAIQAPVLKKYPANLSLTAYSFFFGVVLMAIVSLFMTDLSSDWILTQSEILAVVYAGTITSAFNYGVISWCNKILGPALVALYNPLQPGFSALLSQIFLGSPIYLGSIIGGSLIIAGLYTVTWASHKEKQATVGITSDGSLVSEPLIIHDKSAQQSAHIFSGSSNTSPNPKSYD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01003 385 PANTHER NODULIN MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN 8 376 - -
Tsu05g01003 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 151 - -
Tsu05g01003 385 MobiDBLite consensus disorder prediction 366 385 - -
Tsu05g01003 385 Pfam EamA-like transporter family 197 333 IPR000620 GO:0016020|GO:0016021
Tsu05g01003 385 Pfam EamA-like transporter family 9 135 IPR000620 GO:0016020|GO:0016021
Tsu05g01003 385 PANTHER WAT1-RELATED PROTEIN 8 376 IPR030184 GO:0016021|GO:0022857
Tsu05g01003 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01003 Tsu-Chr5 8686956 8690092 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01003 91 365 Nodulin-like Gene Family AT5G45370 59.140 3.03e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01003 - - mtr:MTR_5g025330 619.387