Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01001 ATGGCAATGGGGGATGACACATGGAAGGCTCATTTGGGCATGGCAGTTGTGCAACTATTATATGGTGGTTACCATGTTATTACCAAAGTAGCCCTTAATGTTGGAGTCAATCAACTTGTTTTCTGCTTCTATAGAGATCTTCTTGCTCTCTTCATTATTTCTCCCATAGCTTTCTTCAAAGAAAGACATACAAGGCCTCCCATTACTAAGCAACTATTGTTATCATTCTTCTTTCTTGGATTAACAGGGATATTTGGAAACCAGCTATTGTTTCTTATTGGCTTAAGTTATACTAATCCAACTTATGCTGCTGCATTACAACCAGCTATTCCTGTCTTTACCTTTCTCTTTGCTGTAATCATGGGTGTAGAAAGAGTAAATTTGAAGAGTTTTGAGGGTGTGGCAAAAGTTGGAGGAACTCTTATATGTGTTTTGGGCGCAGTATTGATGGTTTTGTATCGCGGGCCATCATTGATAGGATATTCAGAATTGGTCATTATACCACAAAATGAGATAAGTGACAGTGGTCAGCAAGAGCCTTCTGGATGGTTGATCAGTGGTTTAAAGGATCTCggatttgataattttgaacTTGGAGTTGTGTTCTTGATAGGGAACTGTATGTGCATGGCTGCTTTCCTAACCATTCTGGCACCGGTATTGAAAAAGTATCCTGCAAATCTATCTGTCACAGCTTATTCATTCTTCTTTGGAGTTTTACTAATGGCGATAGTCTCATTATTCATGACTGATTTGTCAAGTGACTGGATTTTGACACAATCAGAAATACTTGCAGTTGTTTATGCTGGAACTATTGCATCTGCCTTTAACTATGGAGTCATTAGTTGGTGCAACAAGATATTAGGGCCAGCTTTAGTTTCCCTATACAATCCACTTCAACCTGGTTTTTCTGCCTTATTATCTCAGATATTCCTTGGAAGTCCAATTTACTTGGGAAGTATCATAGGAGGATCTTTGATCATTGCTGGTCTTTATACTGTTACCTGGGCATCTTATAAAGAAAAACAGACAACTGTTGGAATTATTACTTCTAACGACTCTTGGCGCCGCACCGTCCCTCCTCGCTCCGTCTTCCTCTTCCCCCATCTCCGCCGCCGTCGTCCTCCCAACCTCTCTCTCGCACTCGCTCGCAATACAATGTCTTGCACCACTTTCAATGTTGGAACTTCTTTGAATCTTCAGCATGGAATTTCTAAGCCGCTTGGGTTCagaaacaattttacatttcaCAAATCTTCTACTAACTTATTAAAGACCTTCAATTTGAGCTTCACTGATCATAGTCTTAGTTTGTGTAATATGCGTTCGAGCTCATTCCGAAGTGTTTTGAATTGTGTTGCTCAGAGTTCAGAGCCATCAGCTTCTGTTGGGATTGATACAAACACCAATTCTAAAAAGGTGGTTGTTCTAGTTATTGGTGGAGGGGGACGTGAGCATGCACTTTGCTATGCGTTGCAACGATCACCGTCGTGTGAAAGTGTATTATGTGCTCCCGGCAATGCAGGAATTGCCAGCTCAGGAAATGCGACGTGTATCTCGGAACTTGATGTTTATGATGGTGCAGCTGTAGAGTCATTTTGTCGGGAACGGGGGGTGGGGCTAGTTGTTGTGGGACCTGAGGCTCCGCTTGTTGCAGGTCTATCAAATTATTTAGTTAAGGCTGGAATCCCAACTTTTGGTCCTTCTGCAGAGGCTGCTGCTCTAGAAGGTTCTAAGAATTTCATGAAGCATTTGTGTGACAAGTACGATATTCCAACTGCAAAGTACAAAACGTTTACAGACCCATCTGCTGCAAAGCAATATATTCAAGAAGAAGGAGCGCCGATTGTTGTCAAAGCAGATGGATTGGCTGCTGGTAAAGGAGTTACTGTTGCCATGACACTGGAAGAAGCATATGAAGCGGTTGATTCAATGCTGGTGAAGGGTGATTTTGGCTCTGCAGGTTGTCGTGTCATTGTTGAGGAATTTTTAGAAGGAGAAGAAGCGTCTTTTTTTGCTTTGGTTGATGGAGAAAATGCAATTCCACTAGAATCTGCTCAGGACCACAAGAGAGTTGGTGATGGTGACACAGGGCCAAATACTGGCGGCATGGGTGCATACTCTCCTGCTCCTATATTAACCAAGGAACTTCAATCTATAGTAATGGATTCTATTATCATGCCAACAGTAAAAGGAATGTCAGCAGAAGGTTGCAAGTTTGTTGGTGTTTTATACGCTGGGCTTATGATTGAGAAGAAATCTGGTATGCCTAAGTTAATCGAGTACAACGTGCGATTTGGTGATCCAGAGTGCCAGGTCTTGATGGTTCGGTTGGAGTCTGATTTGGTGCAAGTTCTGCTTGCAGCTTGCAAGGGAGAGTTGAGTGGTGTATCACTGGACTGGTCTCCTGGCTCTGCCATGGTTGTGGTAATGGCAAGTAAAGGATATCCCGGACCATATGAGAAGGGGACTATAATTGAAAACCTTGAAGAAGCGGAGCTTGTTGCTCCAGGTATCAAGATATTCCATGCGGGAACTGCTTTTGATTCTGAAGGAAGATTTATTGCAACTGGGGGGCGTGTTCTTGGGGTTACTGCCAAGGGAAATGATCTTGAAGAGGCACGCAATCAAGCTTATCAAGCTGTTGAAAATGTTAAATGGCCAGGAGGTTTCTATCGCCGAGATATTGGTTGGAGAGCCCTTCCGCAGAAATCTCATGCCACAAAGGTCTAA 2733 0.4237 MAMGDDTWKAHLGMAVVQLLYGGYHVITKVALNVGVNQLVFCFYRDLLALFIISPIAFFKERHTRPPITKQLLLSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAALQPAIPVFTFLFAVIMGVERVNLKSFEGVAKVGGTLICVLGAVLMVLYRGPSLIGYSELVIIPQNEISDSGQQEPSGWLISGLKDLGFDNFELGVVFLIGNCMCMAAFLTILAPVLKKYPANLSVTAYSFFFGVLLMAIVSLFMTDLSSDWILTQSEILAVVYAGTIASAFNYGVISWCNKILGPALVSLYNPLQPGFSALLSQIFLGSPIYLGSIIGGSLIIAGLYTVTWASYKEKQTTVGIITSNDSWRRTVPPRSVFLFPHLRRRRPPNLSLALARNTMSCTTFNVGTSLNLQHGISKPLGFRNNFTFHKSSTNLLKTFNLSFTDHSLSLCNMRSSSFRSVLNCVAQSSEPSASVGIDTNTNSKKVVVLVIGGGGREHALCYALQRSPSCESVLCAPGNAGIASSGNATCISELDVYDGAAVESFCRERGVGLVVVGPEAPLVAGLSNYLVKAGIPTFGPSAEAAALEGSKNFMKHLCDKYDIPTAKYKTFTDPSAAKQYIQEEGAPIVVKADGLAAGKGVTVAMTLEEAYEAVDSMLVKGDFGSAGCRVIVEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPILTKELQSIVMDSIIMPTVKGMSAEGCKFVGVLYAGLMIEKKSGMPKLIEYNVRFGDPECQVLMVRLESDLVQVLLAACKGELSGVSLDWSPGSAMVVVMASKGYPGPYEKGTIIENLEEAELVAPGIKIFHAGTAFDSEGRFIATGGRVLGVTAKGNDLEEARNQAYQAVENVKWPGGFYRRDIGWRALPQKSHATKV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01001 910 ProSitePatterns Phosphoribosylglycinamide synthetase signature. 765 772 IPR020559 GO:0004637|GO:0009113
Tsu05g01001 910 Gene3D - 475 569 - -
Tsu05g01001 910 Gene3D - 665 804 - -
Tsu05g01001 910 Gene3D - 595 664 IPR013815 GO:0005524
Tsu05g01001 910 Pfam Phosphoribosylglycinamide synthetase, N domain 476 576 IPR020562 GO:0004637|GO:0009113
Tsu05g01001 910 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Tsu05g01001 910 SMART GARS_A_3 577 771 - -
Tsu05g01001 910 ProSiteProfiles ATP-grasp fold profile. 583 791 IPR011761 GO:0005524|GO:0046872
Tsu05g01001 910 Pfam Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 577 771 IPR020561 -
Tsu05g01001 910 Hamap Phosphoribosylamine--glycine ligase [purD]. 474 901 IPR000115 GO:0004637|GO:0009113
Tsu05g01001 910 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 578 801 - -
Tsu05g01001 910 Pfam Phosphoribosylglycinamide synthetase, C domain 806 899 IPR020560 GO:0004637|GO:0009113
Tsu05g01001 910 PANTHER OS12G0197100 PROTEIN 464 903 - -
Tsu05g01001 910 TIGRFAM purD: phosphoribosylamine--glycine ligase 476 901 IPR000115 GO:0004637|GO:0009113
Tsu05g01001 910 PANTHER PHOSPHORIBOSYLAMINE--GLYCINE LIGASE 464 903 IPR000115 GO:0004637|GO:0009113
Tsu05g01001 910 Pfam EamA-like transporter family 198 335 IPR000620 GO:0016020|GO:0016021
Tsu05g01001 910 Pfam EamA-like transporter family 11 151 IPR000620 GO:0016020|GO:0016021
Tsu05g01001 910 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 340 - -
Tsu05g01001 910 SMART GARS_C_2 805 901 IPR020560 GO:0004637|GO:0009113
Tsu05g01001 910 Gene3D - 805 910 IPR037123 GO:0004637|GO:0009113
Tsu05g01001 910 SUPERFAMILY PreATP-grasp domain 475 577 IPR016185 -
Tsu05g01001 910 SUPERFAMILY Rudiment single hybrid motif 804 901 IPR011054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01001 Tsu-Chr5 8654892 8674809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01001 93 345 Nodulin-like Gene Family AT5G45370 63.636 3.12e-106 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01001 K01945 - gmx:547987 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01001 05 8654892 8674809 Tsu05g01001 05 8654892 8674809 ECH
Tsu05g01001 05 8654892 8674809 Tsu04g02727 04 31225972 31231268 PCT