Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00998 ATGGCAACAGCAGTTTCAGGATCAATGGGGAGTGAAACATGGAAGGCACATTTGGCTATGGCATTGGTGCAGCTATTCAATGGTGGTTATCATGTAATTACCAAAGTAGCCCTTAATGTTGGGGTTAATCAGTTAGTTTTCTGTCTCTACAGAGATCTACTTGCCCTTTCTATCCTTGCTCCTATTGCTTATTTTCGTGAAAAACGGACACGACCACCCATTACTAAGAACCTACTGATTTCATTCTTCTTTCTTGGATTAACTGGGATATTCGGCAACCAGCTTCTGTTTCTTATTGGTTTGAGCTATACAAATCCAACTTATGCTGCTGCTACACAGCCAGCCATTCCAGTCTTTACATTTTTGTTCGCTGTAATTATGGGTACAGAAAAAGTGAACTTGCACAGATACGAAGGTCTAGCAAAGGTTTTAGGAACTCTTATATGTGTTTCTGGTGCCGTATTGATGGTTTTGTATCGCGGTCCAATTCTGATAGGATATGCTGAAATTGATCATGtaccacaaaataaaattagtgcAAGAGGTCAACCTGAGCCTTCTGGATGGTTTATCGGTGGTTTACAGAATCTTGGGCTTAGCCATTTTCATCTTGGTGTTCTGTGCTTGATAGGGAATTGCATGTGTATGGCTGCTTTTCTGGCCATTCAGGCACcggtattaaaaaaatatcctGCAAATCTATCTGTCACAGCATATTCATATTTCTTCGGAGCTGCTCTGATGGTGACAGTGTCGTTTTTAATGACTAACGAGTCAACTGACTGGAGTTTGACATCATCTGAAGTACTTGCTGTTATTTATGCTGGAACTATTGCATCTGCCCTTAACTATGGACTCATTACATGGTGTAACAAGATAATAGGACCAGCTTTGGTTGCCCTATACAATCCACTTCAACCTGCATTTTCTGCCCTACTGTCTCGAATATTCCTCGGAAGTCCAATTTACTTGGGAAGCATCATAGGAGGATCATTTATCATTGCTGGTCTATATACGGTTACATGGGGATCATATAGAGAAAGAAATGCAACAGTTGGAGTTAGTTGGGATGCTGAACCGCTTATCCGGGATAAAAATGCATATCACGTTTTTTCTGTGTCCTCTAGTGTATCTTCAAGTCCAAAATCAGCAGAAGATTAA 1161 0.3953 MATAVSGSMGSETWKAHLAMALVQLFNGGYHVITKVALNVGVNQLVFCLYRDLLALSILAPIAYFREKRTRPPITKNLLISFFFLGLTGIFGNQLLFLIGLSYTNPTYAAATQPAIPVFTFLFAVIMGTEKVNLHRYEGLAKVLGTLICVSGAVLMVLYRGPILIGYAEIDHVPQNKISARGQPEPSGWFIGGLQNLGLSHFHLGVLCLIGNCMCMAAFLAIQAPVLKKYPANLSVTAYSYFFGAALMVTVSFLMTNESTDWSLTSSEVLAVIYAGTIASALNYGLITWCNKIIGPALVALYNPLQPAFSALLSRIFLGSPIYLGSIIGGSFIIAGLYTVTWGSYRERNATVGVSWDAEPLIRDKNAYHVFSVSSSVSSSPKSAED 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00998 386 PANTHER WAT1-RELATED PROTEIN 14 375 IPR030184 GO:0016021|GO:0022857
Tsu05g00998 386 Pfam EamA-like transporter family 204 341 IPR000620 GO:0016020|GO:0016021
Tsu05g00998 386 Pfam EamA-like transporter family 16 157 IPR000620 GO:0016020|GO:0016021
Tsu05g00998 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 259 347 - -
Tsu05g00998 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Tsu05g00998 386 PANTHER WAT1-RELATED PROTEIN 14 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00998 Tsu-Chr5 8645182 8649599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00998 5 275 Nodulin-like Gene Family AT3G45870 69.742 8.34e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00998 - - gmx:100787738 605.905