Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00988 ATGGCCACCGCCGCTGCCGCAGCACGTCCCCTTGTCACCATCCAAACCCTAGAAGGTGACATGGCCACCGATTCACCATCAACACTCCCCATTCCCGATGTCATGCGCGCTTCAATTCGTCCCGATATCGTCAATTTCGTCCATTCCAATATTTCCAAAAATTCCCGTCAACCCTACGCCGTCAGCCGCCGCGCCGGTCATCAAACCTCCGCTGAATCATGGGGAACAGGTCGTGCTGTTTCACGTATCCCTCGTGTTCCCGGTGGTGGAACTCACCGTGCCGGACAAGCTGCATTCGGAAACATGTGTCGCGGTGGTAGAATGTTTGCTCCGACTAGGATCTGGCGGAAATGGCACCGGAAAATTAACGTTAACCAAAAACGTTACGCTGTTGTTTCCGCCATTGCAGCTTCCGCTGTACCTTCCCTTGTTCTTGCTCGTGGTCACCGGATCGAAACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACTAAAGAAGCTATCAAAGTTTTGAAAACGATCGGAGCTTTTCCGGATGCCGAGAAAGCGAAAGATAGCCATGGAATTCGGCCTGGAAAGGGTAAAATGCGTAATCGGCGATATATTTCGCGAAAGGGACCTCTTATCGTTTATGGTACCGAAGGTGCGAAAGCTGTGAAAGCTTTTAGGAATATTCCTGGTGTGGAGATTACTAATGTGGAGAGATTGAATTTATTGAAACTTGCACCTGGTGGACATTTGGGCAGGTTTGTGATTTGGACAAAATCGGCATTTGAGAAATTAGATTCGATTTATGGGTCATTTGAGAAAGCTTCTGAGAAGAAGAAGGGATATGTACTTCCAAGGGCTAAGATGGTGAACTCTGATTTGACTAGGATTATTAATTCTGATGAAGTTCAATCTGTTGTGAGGCCGATTAAGAAGGATATTAAGCGTCCATCGCTTAAGAAAAATCCTCTTAAGAATCTTAATGTTATGCTTAGGCTTAATCCGTATGCTAAGACTGCTAAGAGAATGGCTTTACTTGCTGAGGCCGAGAGGGTTAAGGCTAAGAAGGAGAAGCTTGACAGGAAGAGGAAGACTGTTTCCAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTACAACACCATGGTCTCGGATTCTGATTATACCGAATTTGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTGA 1227 0.4645 MATAAAAARPLVTIQTLEGDMATDSPSTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIETVPEFPLVVGDSAEGVEKTKEAIKVLKTIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDIKRPSLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDRKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00988 408 PANTHER 60S RIBOSOMAL PROTEIN L4 4 408 IPR045240 -
Tsu05g00988 408 MobiDBLite consensus disorder prediction 57 76 - -
Tsu05g00988 408 Gene3D - 6 311 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tsu05g00988 408 SUPERFAMILY Ribosomal protein L4 16 270 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tsu05g00988 408 MobiDBLite consensus disorder prediction 57 94 - -
Tsu05g00988 408 Coils Coil 345 372 - -
Tsu05g00988 408 Pfam Ribosomal protein L4/L1 family 31 269 IPR002136 GO:0003735|GO:0005840|GO:0006412
Tsu05g00988 408 PANTHER BNAC03G35890D PROTEIN 4 408 - -
Tsu05g00988 408 ProSitePatterns Ribosomal protein L1e signature. 123 149 IPR013000 -
Tsu05g00988 408 Pfam 60S ribosomal protein L4 C-terminal domain 283 355 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00988 Tsu-Chr5 8569850 8571996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00988 4 408 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.704 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00988 K02930 - gmx:100779764 720.694