Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00977 ATGATGATTATTGATAATCTCGCTGGATTGGATTCATACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGGTTTAGAGGAACCTTCAATGAATGTTGAGAATGTGTTGAGTGATGTTAAAATTGGGAAGGCGGAGCTAGCTGTCGAGGATGAAAATGTGAAACCAAAAGTTGTTGCAGAAGATATTCCACGAGAAAATATTCAAGAAACTCTTCACTCGGTCCCGGTTGAGGCTGATGCTCAAATTTTGGATAAAACTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGATGCCGAAAAAATTCTTCAGAGTAATAACGGCACTGAGAATGATGATACTGCATGTCAAAATGGTGACGCTGATGCTGAAACGATAGCAGTGGAGGTTGAGGTGAAGCCTGAAGTTCGTGAAGCAGCTGATGGTAAAACTTGTGATAATGAACCTATATTGTCAAGTCATAACAATCCTAGTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCTTCAAGTCATAACGATCCTATTGCACCACAACCTCCCCCTGCTGATACAATGCCAGAAAGCAAGACTGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCAAGCTGATGAGCCTGCTGATAACGGGGTCCCGGAGTCGCCACAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGCCGGGAACGGAAGAGGACCAAGCGGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGGGCATGGATTTCAAACCTCCCAAATTTTACGGAGAAACACTTAATTGCCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCAGAACATAAAAGGTGGCGAGCTGAATGTGCCTATCGCTTCTCCTCCAGAGCCTGTGACTGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTGTTATAAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGTAAGAAACCATCTTATATGGACAACACAGTCAAAGCAGCACGCAGTAAACCATCAAGACCACAGTTGGAAACATCTGTGGTTGACATTGGACCTCCGGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCTGCGGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAATTGTTTGTTCGTGTTCCATTTGAACAGTCAGAATAG 1605 0.4374 MMIIDNLAGLDSYLDQEMHLEVQPVGLEEPSMNVENVLSDVKIGKAELAVEDENVKPKVVAEDIPRENIQETLHSVPVEADAQILDKTEGEDASDVKVDAEKILQSNNGTENDDTACQNGDADAETIAVEVEVKPEVREAADGKTCDNEPILSSHNNPSTPQPDPSDTNEPIPSSHNDPIAPQPPPADTMPESKTVLEDESKAGEEQADEPADNGVPESPQNMYFLDPDHYYDGNEPGTEEDQAAFMKELENFFRERGMDFKPPKFYGETLNCLKLWRSVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERQNIKGGELNVPIASPPEPVTVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPVIKDRNSVSVQKREKQLKSINLLKRKKPSYMDNTVKAARSKPSRPQLETSVVDIGPPADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00977 534 SUPERFAMILY HSP20-like chaperones 443 530 IPR008978 -
Tsu05g00977 534 SMART bright_3 241 332 IPR001606 GO:0003677
Tsu05g00977 534 CDD ARID 242 327 - -
Tsu05g00977 534 Pfam Hsp20/alpha crystallin family 451 533 IPR002068 -
Tsu05g00977 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 49 533 IPR045147 GO:0006357
Tsu05g00977 534 ProSiteProfiles ARID domain profile. 240 331 IPR001606 GO:0003677
Tsu05g00977 534 MobiDBLite consensus disorder prediction 149 176 - -
Tsu05g00977 534 Gene3D - 240 337 IPR036431 GO:0003677
Tsu05g00977 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 49 533 - -
Tsu05g00977 534 CDD ACD_sHsps_p23-like 453 529 - -
Tsu05g00977 534 MobiDBLite consensus disorder prediction 134 229 - -
Tsu05g00977 534 Pfam ARID/BRIGHT DNA binding domain 243 327 IPR001606 GO:0003677
Tsu05g00977 534 SMART ARID_2 237 327 - -
Tsu05g00977 534 SUPERFAMILY ARID-like 232 341 IPR036431 GO:0003677
Tsu05g00977 534 Gene3D - 432 534 IPR008978 -
Tsu05g00977 534 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 434 534 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00977 Tsu-Chr5 8477197 8483183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00977 235 532 ARID Transcription Factor Family AT1G76510 62.706 1.65e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu05g00977 HSP20 2.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00977 - - cam:101506818 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00977 05 8477197 8483183 Tsu05g00977 05 8477197 8483183 ECH