Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00961 ATGACACGAGCGTTAAGAATTCTCAATTCCGCGGGAAATATCACCGCCGTTGCAGTTGTAGCGCCACCACCGGAAGCCGTAGCTTTGGAGTCCGATTTCGTGGTGATACTAGCAGCTTTACTCTGCGCTTTGATATGCGTCGTTGGACTAATCGCCGTAGCTCGCTGTGCCTGGCTCCGACGAGACTCCGGCGCCGGAAATTCGCCTCAACAAGCTCTAGCTAACAAAGGACTGAAAAAGAAGGTTCTACAATCACTTCCGAAATTCGCTTACGTCGATAGTAACCCTGGAAAATGGCTAGCAACAACAGAATGCGCGATTTGCTTATCGGATTTCGTCGCCGGCGACGAGATCCGTGTTTTACCGCAGTGTGGACATGGATTCCACGTGGCGTGCATCGACACATGGCTTGGATCACACTCTTCTTGTCCTTCATGTAGACAGATTCTGGCTGTAACAAGGTGTCAGAAGTGCGGCAGGTTTCCGGCAACCGGAGGTGAAACTACTTCTACCGGAGTTGCGGTGAGTGAACCAGAGTTGAAATCTTTAGAAGAAGGCAATGTCGGTGCAAATAGTAATAATCATTGTAGTGGGGGtgttagtagtagtagtaataacaGTGGGTTCTTGCCTTAA 636 0.4827 MTRALRILNSAGNITAVAVVAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFAYVDSNPGKWLATTECAICLSDFVAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGGETTSTGVAVSEPELKSLEEGNVGANSNNHCSGGVSSSSNNSGFLP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00961 211 MobiDBLite consensus disorder prediction 185 211 - -
Tsu05g00961 211 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Tsu05g00961 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 182 - -
Tsu05g00961 211 SUPERFAMILY RING/U-box 83 152 - -
Tsu05g00961 211 MobiDBLite consensus disorder prediction 186 211 - -
Tsu05g00961 211 CDD RING-H2_PA-TM-RING 104 147 - -
Tsu05g00961 211 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
Tsu05g00961 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Tsu05g00961 211 Pfam Ring finger domain 104 147 IPR001841 -
Tsu05g00961 211 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00961 Tsu-Chr5 8345039 8345875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00961 1 158 C3H Transcription Factor Family AT1G76410 62.805 1.19e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00961 - - gmx:100787383 313.153