Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00953 ATGAagcatttttctttcttgttagCTATATTTTGTCATGCATACTTTAACCTTTTTATCTTTGCTTTAACATTAATGTGGTTTAGCCTAAACACTAGAACTGCAGCTTTGGTGTTATCAGAAAATCAGACTGATCATTTAACATTGCTCCAATTCAAAGATTCAATATCCAGTGACCCAAATGGAGTCTTAGATTCTTGGAATAGTTCAACCCACTTTTGCAACTGGCATGGAGTTACATGCACTTCCATGCATCAAAGAGTTACAGAGTTGAACCTAGAAGGATATGAGTTACATGGATCAATATCTCCTCATATTGGTAATCTTTCTTTTCTAAGAAACCTCAATCTTGCAAAGAATAATTTCTTTGGAAACATCCCAAATGAACTTGGAAGGTTGTTACAATTGCAACAACTCTTTCTCACCAATAACTCACTCTCAGGGGATTTTCCTATAAACTTGACACATTGTTCCAATCTTGATAGCTTACACTTGGGAGGGAACAATTTAGTTGGAAAAATCCCAGTTGAAATCACCTCTCTTAAAAAGCTTCAAGTACTAGTTCTTCGGAATAACAAGTTAAACGGAGGAGTTCCATCATTCATAGGGAATCTCTCATCCTTAATATTACTTGTAGTTGGTGATAACAACTTGGTGGGAAATCTTCCACGAGAAATATGTCGCCTCAGAAGCTTGACAGCGATAGTAGTCGGGATCAACAAACTATCTGGTGAAATTCCTTCTTGTCTTTACAATATGTCATCTTTGACTATAATCGCAGCTCCAGCGAATCAGTTTAATGGCTCTCTTCCACCCACTATGTTCAACACCCTTTCCAATCTTCAAGATATATCCATTGGTGAGAATCAACTATCAGGTCCAATACCCACTTCTATTGCAAATGCTTCTTCATTAACATCATTTACTATTGGTATAAACTATTTTGTCGGACATGTTCCAAGTCTAGGAAAGCTACAAGATCTTTGGCGGATAAACATGGCTGACAATAAGTTAGGCGAAAATTCAACTAAGGATTTAGAGTTTTTAATATCGTTGAAAAACTGTAGTAAGTTGCTATATGTAAATATAGGCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCATTGGAAATTTATCCACCCAACTTAGTCAACTACATCTTGGTGGTAATATGATATCAGGAAAAATTCCTATGGAAATAGGAAATCTAGTTGGCTTGACTCTCTTGGACATGGAGCTTAACCAACATGATGGAGTTATTCCATCTACTTTAGGGATGTTCCAAAATATGCAAATGTTGGATTTGAGTCAAAACAAATTGTCAGGACTTATACCAACCACCATAGGCAACCTCAGTCAATTGTTTTACCTAAACTTAGGGGAAAATAAGTTAGAAGGAAATATTCCTCCAAGTATAGGAAACTGTCAAAAGCTACAAACCCTATCCTTTTCGAAAAACAATCTTAGAGGAACAATACCCTTAGAGATTTTCACTCTTTCCTCTTTGTCAATCGAGTTGGACTTGTCAGAAAACTCATTCAATGGTAGCTTATTGAAAGAAGTGGGtatgctaaaaaaaatagatatattaGATGTCTCTAAGAATCATATTTCTGGTAACATTCCTGAAACCATTGGTGAATGCATAGGCTTAGAATACCTTAATTTGCAAGGGAACTCCTTTCATGGAATCATACCATCTTCTTTGGCTTCTCTTAGAGGGCTTAGATATTTAGATCTGTCAAGAAATCGATTGTCTGGACCAATTCCTAGTGTTCTACAAAATGTTTCTCTTTTACAATACTTGAATGTTTCTTTTAACATGTTGGATGGAGAGGTTCCAAAAGAAGGTGTCTTTGGAAATGCTAGCGCATTCGCGATGGCTGGAAACAAAAAGCTTTGTGGAGGTATTTCACACCTGCACCTACCGCCATGCCTTGTAAAACATATGAATCATGTAAAACACCATAACTTCCATTTGATAGCAGTGATAGTTAGTGTGGTTGTTTTTCTCATCATAATGCTTCTTATTCTACCTATCTACTTGATGaggaaaagaaacaataaaCCATTTTCAGATTCACCAACAACTGACCAACTAGCCATGATTTCTTACCAAGACTTGTATCAGGCAACCGATGGGTTCTCAGCTAAAAACTTGATTGGATTAGGAGGCTTTGGTTCTGTGTATAAAGGGAATCTTATCAAAGAAGATAAAGTTATTGCCATAAAGGTCTTGAACCTTGAAAAGAAGGGAGCTCACAAAATTTTTATTACAGAATGCAATgcactaaaaaatattagacaTCGAAATTTGGTTAAGATTTTAACCTGTTGTTCTAGTATTGATTACAAAGGGCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGAGAAATGGAAGCTTAGAACAATGGTTGCATCCAAGAATAGAGACGGTAGAGCATCCAAGAACATTGGATCTTGATCAAAGATTGGATATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTATTGATGAAAACATTGTTGCTCATTTGAGTGATTTTGGCATAGCAAGAGTCGTCTCATTAGTGGACGATATCTCTTCTAAGGAAACCAGTACAATTGGAGTAAAAGGGACAGTTGGATATGCTCCTCCAgagTATGGAATTGATTCTGAAGTTTCCACTCATGGTGACATGTATAGCTTCGGGATTCTTATATTGGAAATGCTTACGGGAAGAAGACCCACTGATGAAATGTTTATAGATGGTCAAAATCTGCATATGTATGTTGAAATTTCAATTCCTAATAATGTTATGCAAATTTTGGACCCACATATTGTTCCAAGAGATGAAGATGCTGCAATTGAACATGGAAGCAATTTGAATCATATTTTAAGAACAGAGAAGTGCTTGGTTTCACTTTTTAATATTGGTCTTGCATGTTCGATGGAGTCACCGAAAGCAAGAATGGATATAGTGGATGCCACTAGAGAGCTAAACATAATCAGAAAGACATTTCTCGCGGATAAGATAATTGAGATTTCTAGGTCTTCATCCTCATGA 3111 0.3545 MKHFSFLLAIFCHAYFNLFIFALTLMWFSLNTRTAALVLSENQTDHLTLLQFKDSISSDPNGVLDSWNSSTHFCNWHGVTCTSMHQRVTELNLEGYELHGSISPHIGNLSFLRNLNLAKNNFFGNIPNELGRLLQLQQLFLTNNSLSGDFPINLTHCSNLDSLHLGGNNLVGKIPVEITSLKKLQVLVLRNNKLNGGVPSFIGNLSSLILLVVGDNNLVGNLPREICRLRSLTAIVVGINKLSGEIPSCLYNMSSLTIIAAPANQFNGSLPPTMFNTLSNLQDISIGENQLSGPIPTSIANASSLTSFTIGINYFVGHVPSLGKLQDLWRINMADNKLGENSTKDLEFLISLKNCSKLLYVNIGYNNFGGSLPNSIGNLSTQLSQLHLGGNMISGKIPMEIGNLVGLTLLDMELNQHDGVIPSTLGMFQNMQMLDLSQNKLSGLIPTTIGNLSQLFYLNLGENKLEGNIPPSIGNCQKLQTLSFSKNNLRGTIPLEIFTLSSLSIELDLSENSFNGSLLKEVGMLKKIDILDVSKNHISGNIPETIGECIGLEYLNLQGNSFHGIIPSSLASLRGLRYLDLSRNRLSGPIPSVLQNVSLLQYLNVSFNMLDGEVPKEGVFGNASAFAMAGNKKLCGGISHLHLPPCLVKHMNHVKHHNFHLIAVIVSVVVFLIIMLLILPIYLMRKRNNKPFSDSPTTDQLAMISYQDLYQATDGFSAKNLIGLGGFGSVYKGNLIKEDKVIAIKVLNLEKKGAHKIFITECNALKNIRHRNLVKILTCCSSIDYKGQEFKALVFEYMRNGSLEQWLHPRIETVEHPRTLDLDQRLDIIIDVASALHYLHHECEQLVLHCDLKPSNVLIDENIVAHLSDFGIARVVSLVDDISSKETSTIGVKGTVGYAPPEYGIDSEVSTHGDMYSFGILILEMLTGRRPTDEMFIDGQNLHMYVEISIPNNVMQILDPHIVPRDEDAAIEHGSNLNHILRTEKCLVSLFNIGLACSMESPKARMDIVDATRELNIIRKTFLADKIIEISRSSSS 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00953 1036 PANTHER LRR RECEPTOR-LIKE KINASE 31 1025 - -
Tsu05g00953 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Tsu05g00953 1036 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Tsu05g00953 1036 Gene3D Ribonuclease Inhibitor 351 646 IPR032675 -
Tsu05g00953 1036 Gene3D Ribonuclease Inhibitor 211 350 IPR032675 -
Tsu05g00953 1036 SUPERFAMILY Protein kinase-like (PK-like) 689 1015 IPR011009 -
Tsu05g00953 1036 SMART LRR_sd22_2 133 162 - -
Tsu05g00953 1036 SMART LRR_sd22_2 573 599 - -
Tsu05g00953 1036 SMART LRR_sd22_2 525 544 - -
Tsu05g00953 1036 SMART LRR_sd22_2 181 207 - -
Tsu05g00953 1036 SMART LRR_sd22_2 278 304 - -
Tsu05g00953 1036 SMART LRR_sd22_2 428 454 - -
Tsu05g00953 1036 Gene3D Ribonuclease Inhibitor 42 200 IPR032675 -
Tsu05g00953 1036 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Tsu05g00953 1036 PRINTS Leucine-rich repeat signature 573 586 - -
Tsu05g00953 1036 PRINTS Leucine-rich repeat signature 431 444 - -
Tsu05g00953 1036 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Tsu05g00953 1036 Pfam Leucine rich repeat 407 465 IPR001611 GO:0005515
Tsu05g00953 1036 ProSiteProfiles Protein kinase domain profile. 716 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00953 1036 SMART serkin_6 716 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00953 1036 SUPERFAMILY L domain-like 382 636 - -
Tsu05g00953 1036 Gene3D Phosphorylase Kinase; domain 1 681 797 - -
Tsu05g00953 1036 Pfam Protein kinase domain 718 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00953 1036 SMART LRR_typ_2 573 596 IPR003591 -
Tsu05g00953 1036 SMART LRR_typ_2 452 476 IPR003591 -
Tsu05g00953 1036 SMART LRR_typ_2 181 205 IPR003591 -
Tsu05g00953 1036 SMART LRR_typ_2 597 622 IPR003591 -
Tsu05g00953 1036 SMART LRR_typ_2 525 549 IPR003591 -
Tsu05g00953 1036 SMART LRR_typ_2 428 451 IPR003591 -
Tsu05g00953 1036 Gene3D Transferase(Phosphotransferase) domain 1 798 1030 - -
Tsu05g00953 1036 PANTHER OS04G0122200 PROTEIN 31 1025 - -
Tsu05g00953 1036 SUPERFAMILY L domain-like 43 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00953 Tsu-Chr5 8289154 8292878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00953 42 1023 Receptor kinase-like Gene Family AT3G47570 44.177 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu05g00953 Pkinase 4.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00953 - - gmx:100801459 1306.2