Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00952 ATGGTTAAAGTTTGGTTATTGGCTCTAATGATTCTTTACAATGGCTTCTCTTCAACTGTGGATGGCATTCATAATTCAACTAGGCCTGATTTTGTAAATATTGGAGCACTCTTCTCTTTCAATACTAGTGTTGGTAGGATTATAAAAATCGCTTTAGATGCTGCGGTCGAAGATGTAAATTCTGATCCAAATATTCTCGGCGACACCAAGTTAAGGCTCTCTCTTCAAGAAGATTCTAAATATAGAGGTTTTCTTAGCATTGCTGAGGTTTTGCAGCTCATGGCTAGAGATACTGTGGCAATAATTGGCCCTCACAGTTCAGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTATCTCATTTTCAGCTTTGGACCCTACACTTTCTTCACTTCAATTCCCATTTTTTATCAGAACTTGTCACAGTGATCTTTTTCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTCATTGCTGTATacattgatgatgataatgggAGGAATGGAATCAGTGCATTAGGCGATAAGCTTGCTGAGAAGCGTTGCAGGATCTCGTATAAAGCGCCTGTGAGCCCCGAAGCAACTCCGGAGGAGATAACAAATGTGCTAGTTCAGGTGGCTCTTGCTGAATCAAGAGTTATAGTTGTTCATGCCAACACTCTTTGGGGACCGAAAGTGTTTACCGTCGCAAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGTAGTCCTCTATCTTCTGATAAAATGGATGAAATCCAAGGAGTGTTGACACCGCGTGTGTACACGCCGGATTCGGAGCTTAAAAGAAAGTTTGTTACTAAATGGAAAAACTTGACTCATGGACATACTGCCAATGGCCCTCTTGGACTCAGTTTTTTGTCTCTCTATGCATATGATACTATTTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACAGAATCACATTCTCAAATGACTCAAAGTTATCTTCACTAAAAGGAGATAACTTGCATCTTGATGCATTGAACGTTTTCGATGAAGGAAACTCGTTACGTAGAAATATTTACGAGGTTAACATGACAGGTGTGACAGGTTTGTTCAAGTATGCACCTGATAAAAACCTTGTTAATCCTGCATATGAAATCATGAATGTGGTTGGAACCGGAACTCGAAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTCATTCCTCCAGAAACACTTCTTTCCAAACCAGGTAATGATTTTAGGGAAAGTAAAAAGTTATTCCCTGTGATTTGGCCAGGAGACACGGATCAGAAGCCTCGCGGTTGGGTTTTTCCTAACAATGGAAGGCTATTAAGAATCGGAGTACCAATAGGCGTTAGTTACCAACAATTTGTGTCACAAGTACCAGGCACCGATACATTTCAAGGATTCTGCATTGATGTGTTTCTTTCTGCAGTTAACCTTTTGCCTTATGCTGTTCCCTATAAGTTTATTCCATATGGGGATCATAAGAACAATCCTACTAACACCGAGCTTGTCCGTCGGATAACAACCGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACagaaagaacaaaaatggtGGATTTTACTCAGCCATTTGTTGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAAGGAGGCAGATACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTGTCTTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAGAAAACAAGTGATTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTCTCACATAGGGAAAATACAGTGAGCACACCGGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTTCTTATAATCACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACAGTACAGCAACTTTCTTCGCCCGTTAAAGGCATTGAGAGTTTAGTACTCGGCAAGGAACCAATTGGTATCGCTCAGGGTTCATTTTCTAAAGATTATTTAATCCATGAAATTGGTATTGATGAGTCTAGGCTTGTTCCTTTAGTAACACAAGAAGAAGTTGCTAGAGCACTGAAAAATGGTCCTCAAGATGGTGGTATTGCTGCTTATATCGATCAACGTGCCTATATGGATATCTTCCTTTCAAGCCGCTGTAAATTTACTATTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTCGCCTTTCCAAGAGACTCACCATTAGCAGTAGACCTATCAACTGCCATTTTGCAAATGGTAGACAATGGCGACTTACAAAGGATTCATGACAAATGGCTTTTGAGTAGAGCTTGTTTATCACAAGGCGCAAAGCTTGAAGTCGAAAGACTCAAACTAAAAAGCTTTTGGGGCCTCTATGTGATATGTGGATCAGCTTGTTTGCTTGCTCTACTCATATATGTAATACAGATAATTAGACAGTATATCAAGCACCAAGCAGAAGAACCTGATTCTCCTGACCAAAACCCGAGCCCAGGATCTTCGAGTTTGAGGCGTTTCCTCTCCTTTGCagatgaaaaagaagagacTGTTAAGAACCGTTCGAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAAGTAGTGAGGGAGGATCATCTTCCATCATCTCCAATAAAGATTATGTTGCTCAACCATCTTCATGCATAGCTGATTCTGTTTCTAATGGTGGAAGTGAAAAAGTATTCATCAAAGTGGTGTAA 2856 0.3929 MVKVWLLALMILYNGFSSTVDGIHNSTRPDFVNIGALFSFNTSVGRIIKIALDAAVEDVNSDPNILGDTKLRLSLQEDSKYRGFLSIAEVLQLMARDTVAIIGPHSSVTAHVITHIANELQVPLISFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGISALGDKLAEKRCRISYKAPVSPEATPEEITNVLVQVALAESRVIVVHANTLWGPKVFTVAKNLGMMGTGYVWIATAFLSAILDISSPLSSDKMDEIQGVLTPRVYTPDSELKRKFVTKWKNLTHGHTANGPLGLSFLSLYAYDTIFALAHALDAFFKQGNRITFSNDSKLSSLKGDNLHLDALNVFDEGNSLRRNIYEVNMTGVTGLFKYAPDKNLVNPAYEIMNVVGTGTRRIGYWSNHSGLSVIPPETLLSKPGNDFRESKKLFPVIWPGDTDQKPRGWVFPNNGRLLRIGVPIGVSYQQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDHKNNPTNTELVRRITTGEFDGAVGDIAITTERTKMVDFTQPFVESGLVVVAPVKEADTSALAFLAPFTPRMWFVTAVFFIIVGTVVWILEHRVNDEFRGPPRKQVITIFWFSFSTMFFSHRENTVSTPGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPVKGIESLVLGKEPIGIAQGSFSKDYLIHEIGIDESRLVPLVTQEEVARALKNGPQDGGIAAYIDQRAYMDIFLSSRCKFTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSRACLSQGAKLEVERLKLKSFWGLYVICGSACLLALLIYVIQIIRQYIKHQAEEPDSPDQNPSPGSSSLRRFLSFADEKEETVKNRSKRKKMERISYRSSEGGSSSIISNKDYVAQPSSCIADSVSNGGSEKVFIKVV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00952 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 927 - -
Tsu05g00952 951 Pfam Bacterial extracellular solute-binding proteins, family 3 488 812 IPR001638 -
Tsu05g00952 951 PIRSF IGluLR_plant 1 940 IPR017103 -
Tsu05g00952 951 MobiDBLite consensus disorder prediction 892 918 - -
Tsu05g00952 951 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Tsu05g00952 951 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Tsu05g00952 951 Gene3D - 467 583 - -
Tsu05g00952 951 PANTHER GLUTAMATE RECEPTOR 3.6 14 927 - -
Tsu05g00952 951 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Tsu05g00952 951 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Tsu05g00952 951 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Tsu05g00952 951 Gene3D - 584 706 - -
Tsu05g00952 951 CDD GluR_Plant 472 812 - -
Tsu05g00952 951 Gene3D - 50 400 - -
Tsu05g00952 951 Gene3D - 148 425 - -
Tsu05g00952 951 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Tsu05g00952 951 Gene3D - 707 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00952 Tsu-Chr5 8284473 8289133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00952 5 913 Ion Channels AT3G51480 58.333 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00952 K05387 - gmx:100785258 1494.95