Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00947 atgtcttgttcttcttcatctGGATCCGAGGAAGATGATGAGGGCTTTGAGTCCTATAGGAAAGGTGGTTACCATGCTGTTAGAGTGGCCGATCATTTTGCCGGTGGAAGGTATATAGCTCAGAGGAAACTTGGTTGGGGTCAATTTTCCACCGTCTGGCTTGCTTATGATACTACCACCTCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCATTCACGAGATCGATGTTCTTTTATCTATTGCTGATGGCGACCCATCAAATTCAAAGTTCGTCGTCCAATTGATTGATCACTTTAAGCACACAGGTCCAAATGGACAGCACCAATGCATGGTCCTTGAATTTCTTGGTGACAGCTTGCTTCGTTTGATCAGATATAACCATTACAAAGGTCTTCCGTTGAATAAAGTTAGAGAAATCTGCAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACTGACTTAAAACCTGAAAACATTCTTCTATTATCAACTATCGATCATTCCAAAGACCCTTTTAGATCCGGGAGGTCCCCAATTTTAGAACGACCTGAGGGAAACACAAACGGTGGAATTACGAGTCTTATTGAAAAAAGGTTGAAGAGGCGAGCAAGGAGTGCAGTTGCTAAAATAGCAGGAAGAACAGCTTCAATTGAAGGAAGAGGAGACGCTGCAAAGTCTAGTAAAAATATCAACGGTGTTGACATGAGATGCAAGATTGTTGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACGAGGCAGTATAGAGCCCCTGAAGTTATACTGAAGTCCGGTTATTCCTTCTCCGTTGACATGTGGTCTTTTGCTAGCATTGTTTTTGAACTTGCCACCGGAGATATGTTATTTACACCCAAAGGTGGACAAGGTTTTAGCGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTAGGAAAGATGCCCCGGAAGATTGCTACTTCTGGAGCTATGTCGAAGGATTACTTTGACAGGCATGGTGATCTAAAAAGGATTAGAAGGCTAAAATATTTACCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCGTGACTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGACAGTGCCTGCAACACCCCTGGCTGAACTGTAAGGAATCAACACCAAATGAAATGAGAAATGAATCCACTGTGGAAAAGGTTAATGTTGGTATGAGTAACCTTAAAATCAAGCGAAGCTTAATGGCGACCATAAGGCCATTACCGGAGTCAGTTCGCAGTTCAATTCGTTCCGGCATTTCCATGTTCGACTTCACAAGAATCGTTGAGGAACTTGTTTTCAATAGCCTCGACGCTCGCGCTACAAAGGTATCAGTGTTTGTGAATATTGGGAGTTGCTACTTAAAAGTAGTTGATGATGGAGGTGGAATTACTCGAGATGGACTGGAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAAATTGGCTGACCTAAATACCACAAGTGAAAACTTTGGTTTTCGGGGTGAAGCTTTAGCTTCCATTTCCGAAGTCTCTTTGTTGGAAATAGTGACAAGAGCTTATGGAAGGCCAAATGGatataaaaaagtattgaagGGGTGCAAGTGTTTATATCTTGGTATTGATGATGATAGAAAGGAAGTAGGCACAACAGTCATTGTCTGTGAAATATTTTACAACCAACCAGTTCGGAAGAAACACATTCAATCCAGCCCCAATAAGGTACTTCAATCAATCAAGAAATGTGTAATGCGGCTTGCACTTGTATGCCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATCAGCTTTTCTGCTCACATGCTGCTGCTTCTCCGCTGTCACTTGTAACCACTGGCTTTGGGGTGGAGGTCACAAACTCTCTTCATGAATTAGAAGTTGGAAATGATATCATAAAGCTTACAGGATACATATCAGGTCCTTGCAATACCCTGGATATGAAGGCCTTACAGTACCTCTATATCAACTCACAATTCGTTTGCAAGGGCCCTATTCACAAGCTTTTAAGTCAATTGGCTATTAGGTTTGAGCATCATAACTCGAGGAGTGCTGATAATGAATGCCAAAACAGAAAGAGAGGAAGATCTCAACCATGTCCGGCATATATCTTGAATTTAAGGTGCCCTCGCTCTTTATATGTTTTGAGCTTTGAGCCATCAAAAACTTATGTTGAATTCAAGGATTGGTCTCCAATACTAAACTTCATCGAAAAGGTCATCAAACAGTTCTGGAAAGGAAGCATAGCTTGTGGAGATTCCTCCAATAAAGCCGCTTCTATGGTTCAAGAAGATCAACTGGAGAAAGTAGATTTAGATGTCAACACCATTTCAGCAGAAACAGATATATCAAAATTTGGAAACCAAAATCATAAAGATTGTTTAGACCCCTTCTTTTCCACTTCAGACAACCTAACTGAAGATGACAATCATCAATGCAACAGAGAGGATGTTAGAACCACTGTTGGTTACTTACATCAAAGGACTGAGATGTTCAAAGAGAAACAAAATAAGGGAGGGTTTCACTGTCGGACTGGTTATTCTGGCAATTTACTGGATGTTTCATTCGCCAAAAGCATGCCCACCACTATGAAAAAGAATAACAACTTCTTGACATATGATAAAGATTTACTGCAAGGAGTTTACTTTGTGGATGCTATGCGTCCTGCTGTAGAAAGTTTCTGTGATAATACACCTTTTTATGCAACAAGTTCTTCacatggaaaaaaattaaataaagtagaTGCTAGTGTGATCTGTGAACCATTTGAAGCTGATTCCCTTTATGACTCCTATGGGTTTGGTTATGATGTAGATATTGGTGGGGATTTTCAAAAGCCTTTTCTAAAGAGTTGCTCTACACAAAAAGGAAGAATCCTGCATGAGAAGACTTCGCTCGTAAATGATGAACTTGAACTCCAAACTTATAGCTTTTGGAGCAAGCAAAATCTAGGGGAGGATTGTTTCAGTGGTAGTAAGGATTTATATACCCGTCCCCGCGTAGAAGttgcaaaaaaattaaagatgtCTGGAGATTCTGATTTTCTTGCAAAGGCATGGCCTGAAGAAAATTGTCTCCCTCCAGGTTCATGGTATTCAGCAACAGAATTAGGTTACTCTGGTTCTGATGGTCGGTTATCAAACTCTGAATGGGATCCTGTCTATCAAGAGCCCTCATCTCGAGCTACTGCATTGGGTGTTTATCATACCAATGATATTAATGATCTTAGAGAAGAATCTAGATGGTATAAAAGGACTCATCGTACACcactttttgatgatgatgaagaaaatgagaaCAACTTCAGTTACGATCTTGGAGGAGCATCTAGATACTGTACAAGGATCCATCGTACCCATATTTTTGATGAGGAAGAAAATGAGCACAACTTCAGTTATGACATGTCAAGGAATACTAACCGGCATCCCTGCACCTCAAGTTTTGCAAATAGTGGATATAGTTTTGATGGTGCTGTTGATTGTAATGAAATATTCAACAGATTGGTTAACTGGCCTGATTTCGGCAATACACATTTCACAGAAAGGTCGGATATTTTAAATGAGGAGCCAGATTGGCTTTTACCCGAGTCATGTGTTAGAAACTGTAAGAGACCCAACATTATCCAAGGCGAAAAGGATCGTTTTAGGCATCCAACTTTGGAAAAGACTCGTGTAAGATCTAAAAGAAGCTCCTCAGCCCCTCCATTTCATAAAAGTAAAAGGAGGTTTTTCTCTTTAAATCAGCCTCCCAAAATGGTAGCTGAAAGACCTACCGGTCAAGCATCCCACCCTGCTTCCAATCTTCTagAAGCTAGTGATTTTAAATACTCTCAACATCCTCCTGGTGCTCTTAACCCCAACAATGAAGATCTATTGGAAGATCTCAAAATGAATGTGAAACGGAGTTCGGAGGTTCCGGGGGCTACACAGGTTAAAGACATTGCTGAGATTGATGGGTTTGAAAATTCCAGAGTTCAAAAGAATGACCCACTCAGGGAATTGATATCTAGGGAAGTGCAAGATTCCATAGATTATGGGACCAAATGGAGGAGCTTCTCACCTCAACCTCCAAAGAATGATAAACCAATTGATattcaaagtcaaaacaatataCTTGACATCTCTTCTGGGTTCTTGCATCTTGCTGGAAATTCACTAATACCCGAAACTATCAGTAAGAAATGCCTCGAGGATGCCAAAGTTCTCCATCAGGTGGATAAGAAATTCATTCCAATCGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGcATGCTGGAGACGAAAGAATCAGACTGGAAGACTTGCGTCAAAAGGTATTATCTGGAGAAGCAAAAGCAATAACCTATCTAGATGCTGAACAGGAGCTGGTGCTACCAGAGATTGGTTATCAACTACTTCATAGTTACAGTCAACAGATTAAAGATTGGGGATGGATCTGTAATGTTCACACTCAAAATTCTGAAACCTTTAGAAGGAATTTGGATATTCTCAACAGACAACAAATGACCATCACTCTTGTTGCGGTACCGCATATTTTAGGTGTCAATTTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGCTAGCTGATACTGATGGATCATCAACAATGCCACCGTCCGTTGTACGACTCCTAAATTCGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTCAAGAGCTAAGGCATACATCACTCTGTTTCCAGTGTGCTCATGGGAGACCAACCACTGTTCCTCTAGTCAACTTGGAGGCACTGCATAATCAAATTCCCAAGCTTGGACTGATGAATGAGAGCTCAAGTAACAAGTGGCATGGATTACAAAGGCATAAAGTGTCTATTGAACGTGCAGTACAGCGTTTAAGTTCTGCCACAAGGAGTTAG 5064 0.3973 MSCSSSSGSEEDDEGFESYRKGGYHAVRVADHFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAAIHEIDVLLSIADGDPSNSKFVVQLIDHFKHTGPNGQHQCMVLEFLGDSLLRLIRYNHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLLSTIDHSKDPFRSGRSPILERPEGNTNGGITSLIEKRLKRRARSAVAKIAGRTASIEGRGDAAKSSKNINGVDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKSGYSFSVDMWSFASIVFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATSGAMSKDYFDRHGDLKRIRRLKYLPLDKLLIDRYKFSANDARDFSEFLLPLFDFAPEKRPTARQCLQHPWLNCKESTPNEMRNESTVEKVNVGMSNLKIKRSLMATIRPLPESVRSSIRSGISMFDFTRIVEELVFNSLDARATKVSVFVNIGSCYLKVVDDGGGITRDGLELVGERYATSKFLKLADLNTTSENFGFRGEALASISEVSLLEIVTRAYGRPNGYKKVLKGCKCLYLGIDDDRKEVGTTVIVCEIFYNQPVRKKHIQSSPNKVLQSIKKCVMRLALVCPNISFKVVDIEREDQLFCSHAAASPLSLVTTGFGVEVTNSLHELEVGNDIIKLTGYISGPCNTLDMKALQYLYINSQFVCKGPIHKLLSQLAIRFEHHNSRSADNECQNRKRGRSQPCPAYILNLRCPRSLYVLSFEPSKTYVEFKDWSPILNFIEKVIKQFWKGSIACGDSSNKAASMVQEDQLEKVDLDVNTISAETDISKFGNQNHKDCLDPFFSTSDNLTEDDNHQCNREDVRTTVGYLHQRTEMFKEKQNKGGFHCRTGYSGNLLDVSFAKSMPTTMKKNNNFLTYDKDLLQGVYFVDAMRPAVESFCDNTPFYATSSSHGKKLNKVDASVICEPFEADSLYDSYGFGYDVDIGGDFQKPFLKSCSTQKGRILHEKTSLVNDELELQTYSFWSKQNLGEDCFSGSKDLYTRPRVEVAKKLKMSGDSDFLAKAWPEENCLPPGSWYSATELGYSGSDGRLSNSEWDPVYQEPSSRATALGVYHTNDINDLREESRWYKRTHRTPLFDDDEENENNFSYDLGGASRYCTRIHRTHIFDEEENEHNFSYDMSRNTNRHPCTSSFANSGYSFDGAVDCNEIFNRLVNWPDFGNTHFTERSDILNEEPDWLLPESCVRNCKRPNIIQGEKDRFRHPTLEKTRVRSKRSSSAPPFHKSKRRFFSLNQPPKMVAERPTGQASHPASNLLEASDFKYSQHPPGALNPNNEDLLEDLKMNVKRSSEVPGATQVKDIAEIDGFENSRVQKNDPLRELISREVQDSIDYGTKWRSFSPQPPKNDKPIDIQSQNNILDISSGFLHLAGNSLIPETISKKCLEDAKVLHQVDKKFIPIVAGRTLAVIDQHAGDERIRLEDLRQKVLSGEAKAITYLDAEQELVLPEIGYQLLHSYSQQIKDWGWICNVHTQNSETFRRNLDILNRQQMTITLVAVPHILGVNLNDVDLLEFLQQLADTDGSSTMPPSVVRLLNSKACRGAIMFGDSLLPSECSLLVQELRHTSLCFQCAHGRPTTVPLVNLEALHNQIPKLGLMNESSSNKWHGLQRHKVSIERAVQRLSSATRS 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00947 1687 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Tsu05g00947 1687 MobiDBLite consensus disorder prediction 1266 1312 - -
Tsu05g00947 1687 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 539 545 IPR014762 -
Tsu05g00947 1687 Gene3D - 660 797 IPR014721 -
Tsu05g00947 1687 Pfam DNA mismatch repair protein, C-terminal domain 663 792 IPR013507 GO:0005524|GO:0006298|GO:0030983
Tsu05g00947 1687 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00947 1687 SMART DNA_mis_repair_2 659 794 IPR013507 GO:0005524|GO:0006298|GO:0030983
Tsu05g00947 1687 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Tsu05g00947 1687 Gene3D - 447 653 IPR036890 -
Tsu05g00947 1687 Gene3D - 1493 1604 IPR042121 -
Tsu05g00947 1687 SMART MutL_C_2 1449 1609 IPR014790 GO:0005524|GO:0006298
Tsu05g00947 1687 CDD STKc_SRPK 27 413 - -
Tsu05g00947 1687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Tsu05g00947 1687 SUPERFAMILY Protein kinase-like (PK-like) 33 415 IPR011009 -
Tsu05g00947 1687 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 563 - -
Tsu05g00947 1687 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 442 - -
Tsu05g00947 1687 Pfam MutL C terminal dimerisation domain 1448 1609 IPR014790 GO:0005524|GO:0006298
Tsu05g00947 1687 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00947 1687 Gene3D - 1452 1640 IPR042120 -
Tsu05g00947 1687 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Tsu05g00947 1687 SUPERFAMILY Ribosomal protein S5 domain 2-like 645 794 IPR020568 -
Tsu05g00947 1687 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 468 646 IPR036890 -
Tsu05g00947 1687 SUPERFAMILY DNA mismatch repair protein MutL 1447 1640 IPR037198 -
Tsu05g00947 1687 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00947 1687 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00947 1687 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00947 Tsu-Chr5 8233761 8247253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00947 4 414 EF-hand Containing Proteins AT5G22840 51.404 9.11e-152 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Tsu05g00947 MutL_C 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00947 K08739 - gmx:100788019 1668.67