Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00943 ATGACGAAAACTGCTTCCGATGCCAAACCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAGCTGGAACTAAGCAATCGAAGAAAGCTAACAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTGTTCATgtCTGAATTCAGAGAGAGATTCAAGAAGGAGAATCCTAACAACAAATCCGTCGCTGTGGTCGGGAAAGCTGGCGGAAAAGAGTGGAAAGCAATGTCTGCTGCGGACAAGGCTCAGTACGCTGCCATTGCtgagaagaagaaggaagagtACGAAAAGGCTATTCGAGCTTACAACCTTGGCTTGGTATTTGATCTATttttttactctattaatttttgCAACTGTAATTTTCTAGCGTTTTGA 387 0.416 MTKTASDAKPADNRLKRKGAGAGTKQSKKANKDPNKPKRPPSAFFVFMSEFRERFKKENPNNKSVAVVGKAGGKEWKAMSAADKAQYAAIAEKKKEEYEKAIRAYNLGLVFDLFFYSINFCNCNFLAF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00943 128 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 107 - -
Tsu05g00943 128 SUPERFAMILY HMG-box 25 106 IPR036910 -
Tsu05g00943 128 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Tsu05g00943 128 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 107 IPR031061 -
Tsu05g00943 128 MobiDBLite consensus disorder prediction 1 42 - -
Tsu05g00943 128 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Tsu05g00943 128 CDD HMGB-UBF_HMG-box 37 87 - -
Tsu05g00943 128 Gene3D High mobility group box domain 21 109 IPR036910 -
Tsu05g00943 128 SMART hmgende2 36 107 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00943 Tsu-Chr5 8196670 8198314 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu05g00943 HMG_box 1.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00943 K25507 - gmx:100499992 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00943 05 8196670 8198314 Tsu05g00943 05 8196670 8198314 ECH
Tsu05g00943 05 8196670 8198314 Tsu04g02663 04 30081748 30083468 ECH