Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00940 ATGGATTCCTCACTCACTACCCTACTTCTCTTCAACAACACCATTCAACCAGagTTGATGAGAAGCGTGCATGTGTACCGTGGTGAATGTGATGGAGAAgaaagagaagttgaaagaGAGTTTGTTTTTTCTGAGAATGGTTCTTATGTTGAAATGCAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTAAAGAAATTTTTGAAGGGTATACTAATGGAGTTTGGCTTTGTATTTTTGCTTTTCATGCTTATAATACTCCTCCATTTTCTCACATTCCAACTCTTTTGTTGGTTACAAGAAATCCAAAGCTTCAGGCTATTCCAAACTTGCTCAATGATCTCCTCATGATATACAAGTTGGAACCGAAGGAGGAACGCAGAGATACACCAGAGAGCTCTACAGCGGAAGAATCGAAAGGAAACAACGACAATGTCCAGCCACCAAGAAAAGTTTTTCCTGTGCTTAATCAGGATCTCAATTGTCTTCCTTATGAAGATGACGAGTCTGAGTTACTGGACGACAAGTCCGAGTTACTAGATACCAAGTCTGAGTTACTGGATGACGAGACAGATTTTGAAAGTTCATCAGGTTCGGTAGGAAAGAAAAGGAGGGCAGCCAGTGACATTGTTGCAAAAATAACTTTACCGGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCGTCAAAGAATCTAAACATTGGCCTTACTGTTCTGAAAAGAAAGTGCAGAGAATTCGGTATTCCTCGCTGGCCTCACAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGAGGCGAAACATCAGGAAATGGAGGATAAAGCTGCAGCAATGGCAATGATAAGGAGGCAAAAGATGTTGGAATGTGAAAAGGAAAACATAGAGAAAATGCCCTTCATGGACATACAAAGCGAGACTAAGAGATTCAGACAAGAAGTTTTCAAGAGAAGGCACAGAACTAGAGTTATGGAAAAACAGAATTCAACAGTAGCAAGCAATTAG 1026 0.3918 MDSSLTTLLLFNNTIQPELMRSVHVYRGECDGEEREVEREFVFSENGSYVEMQATPILRLLKSFVSKEIFEGYTNGVWLCIFAFHAYNTPPFSHIPTLLLVTRNPKLQAIPNLLNDLLMIYKLEPKEERRDTPESSTAEESKGNNDNVQPPRKVFPVLNQDLNCLPYEDDESELLDDKSELLDTKSELLDDETDFESSSGSVGKKRRAASDIVAKITLPDLVKYFDMPIVEASKNLNIGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEMEDKAAAMAMIRRQKMLECEKENIEKMPFMDIQSETKRFRQEVFKRRHRTRVMEKQNSTVASN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00940 341 Coils Coil 260 280 - -
Tsu05g00940 341 Pfam RWP-RK domain 216 263 IPR003035 -
Tsu05g00940 341 ProSiteProfiles RWP-RK domain profile. 198 283 IPR003035 -
Tsu05g00940 341 PANTHER PROTEIN RKD4 7 334 IPR044607 GO:0003700
Tsu05g00940 341 MobiDBLite consensus disorder prediction 128 152 - -
Tsu05g00940 341 PANTHER PROTEIN RKD5 7 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00940 Tsu-Chr5 8162700 8166088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00940 15 341 AtRKD Transcription Factor Family AT4G35590 48.795 2.63e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu05g00940 RWP-RK 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00940 - - gmx:100306328 446.817