Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00934 ATGAAAAGCCCTAACCCTAACTCTTCCAAGAATTCAATAGCTTGCCCCAAAGAAACCAATCCACCCTTTAAGAGTTCTAAAGGATCCATGGAAGAAGATACCCTGAAAACGGCTCTTGAAGTGTTGTTAGAGCTGAAAATGGGCAAGAACGAGATTGGTCGTAGAGATCCAAAGGTTGCGGTGGCAAATAGTTCAATGGTGGAGGTGATGGGCGGAGCTGTACACGACGGTCAATctataaaaaagagaaagaataaCATTGAAGTGAAAGACATTTATCCCTCTAAATATCCAATCTGCCCTAGGTGTAAAGGAGAGTTTTTCACATATAGTGCTGTAGTTGAACACTTGCTAAAAAACCCTAATTGTGCTTCTAGTGGTACCTCTAATCCACCTCAACTTGATCTTAACAAGGGTGCTGATGAAATTGAGGTCCAACCAATGGAGATAGAGGGGTCCTCTaatgctgctgctgctgcacCAGAGCCTGCTGAGCGAAAGAAAAAGAGGGCAACCAGGGACCATGTTGCAAATATTACTGTATCGGATTTGGTCAAGTACTTTGATATGCCACTTTTAGAAGCCTCAAAGAATCTAAAAATTGGCACTACTGTTCTCAAAAGAAAGTGCAGAGAATTAGGTCTTCCCCGCTGGCCTCACAGGAAGATCAAATCACTGGACAGTCTCATCGAtaatcttcatcagGAAGAGGCAGAACATAAAGAAATGGAGAATAAAGCTGCAGCAATGGCAGTGAGAAGGAAGCAAAAGATGGTGGAAAGTGAAAAAGAAAGGATAGAGAAGAAGCCATTCACTTCCATAGAAGGTGAAACCAAGAGGTTGAGACAACATGTTTTCAAGAGAAGGTACCATGCTAGAGTTATGGAAAAACAGAATTCAACAGTATCAAGCAATTAG 918 0.3976 MKSPNPNSSKNSIACPKETNPPFKSSKGSMEEDTLKTALEVLLELKMGKNEIGRRDPKVAVANSSMVEVMGGAVHDGQSIKKRKNNIEVKDIYPSKYPICPRCKGEFFTYSAVVEHLLKNPNCASSGTSNPPQLDLNKGADEIEVQPMEIEGSSNAAAAAPEPAERKKKRATRDHVANITVSDLVKYFDMPLLEASKNLKIGTTVLKRKCRELGLPRWPHRKIKSLDSLIDNLHQEEAEHKEMENKAAAMAVRRKQKMVESEKERIEKKPFTSIEGETKRLRQHVFKRRYHARVMEKQNSTVSSN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00934 305 MobiDBLite consensus disorder prediction 152 173 - -
Tsu05g00934 305 PANTHER PROTEIN RKD5 135 298 - -
Tsu05g00934 305 MobiDBLite consensus disorder prediction 1 31 - -
Tsu05g00934 305 ProSiteProfiles RWP-RK domain profile. 162 247 IPR003035 -
Tsu05g00934 305 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g00934 305 PANTHER PROTEIN RKD4 135 298 IPR044607 GO:0003700
Tsu05g00934 305 Coils Coil 226 253 - -
Tsu05g00934 305 Pfam RWP-RK domain 178 226 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00934 Tsu-Chr5 8108318 8111178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00934 166 305 AtRKD Transcription Factor Family AT4G35590 55.319 3.59e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu05g00934 RWP-RK 6.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00934 - - qlo:115950490 193.741