Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00931 ATGGGAGGTGACGCAACCGCTGATACTTCGACGGAGCAACAATCTACCGACGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAAATTAGCCTCGATTCCACCGTTGGTACCTTTAAGGATGTTGTTGCTCAGAATTGTGATATCTCTGCTGATCAACAGCGTTTGATTTATAAGGGTCGGATCCTTAAGGATGATCAAACCCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTACACCTGCGAATACAACTGGTGGGACTAATACCGGTGGTGCCAATACCACAACTACAAATGCTAGAGGTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGTGCTTCATTGTTTCCAGGACTAGGAGGTATCAATGGGATGGGAGGAGGAGGTGGACTCAATAGTTTATTTGGAGCAGGACCTCCAGATCTTGAACAGTTGCAGCAACCATTTATGTCAAATCCTAATTTAGTGAGAGAAATTATGAACTCACCTGCaatgcaaaatttattaaataatccCGAGATAGTGCGCAATCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCTCACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCAACAAGGAATCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAATCTTCTCCTGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAACACAGGGAATGAGAGCGCCAGAGGTTTGGGGACTCAAGGTGGGCAAACGAGGAATCAATCAACCAATCCCTCAACTACTAGTGGTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAACCTAATGTTAGGAGGTCAACAACTACTGCTGCGGATGCTCGGCAGCAGACTCCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGTCCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCaaacaatgaatcagATTCTTGGTATGAATACTGATCAACGTGGGATGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAGCTTGGTCAGCAGCAATCAACACAGGAACCTGGTCAAACAGGTGGAGGCAATGTGAACAACATGGGGCTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCTACCCAACTTTCCCAACTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGAAATGTCCATGCAGCAGTTGAGCGGCTTTTGGGAAACACTGGACAGTAG 1629 0.453 MGGDATADTSTEQQSTDGVKINIRCSNGSKFSVQISLDSTVGTFKDVVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGTNTGGANTTTTNARGAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNESARGLGTQGGQTRNQSTNPSTTSGEATSPVPNTNPLPNPWSSAPTGGAQPNVRRSTTTAADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLSQLMQNPAISQMMQSILSNPQTMNQILGMNTDQRGMPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGNVNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00931 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Tsu05g00931 542 SMART CBM 403 438 IPR006636 -
Tsu05g00931 542 SMART CBM 145 186 IPR006636 -
Tsu05g00931 542 SMART CBM 349 400 IPR006636 -
Tsu05g00931 542 SMART CBM 199 238 IPR006636 -
Tsu05g00931 542 SMART ubq_7 19 90 IPR000626 GO:0005515
Tsu05g00931 542 Gene3D - 482 542 - -
Tsu05g00931 542 PANTHER UBIQUILIN 4 542 - -
Tsu05g00931 542 CDD Ubl_Dsk2p_like 19 91 - -
Tsu05g00931 542 MobiDBLite consensus disorder prediction 322 348 - -
Tsu05g00931 542 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Tsu05g00931 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Tsu05g00931 542 SUPERFAMILY Ubiquitin-like 12 101 IPR029071 -
Tsu05g00931 542 SMART uba_6 500 538 IPR015940 -
Tsu05g00931 542 CDD UBA_PLICs 500 538 - -
Tsu05g00931 542 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Tsu05g00931 542 MobiDBLite consensus disorder prediction 274 356 - -
Tsu05g00931 542 MobiDBLite consensus disorder prediction 274 314 - -
Tsu05g00931 542 Gene3D - 195 252 - -
Tsu05g00931 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Tsu05g00931 542 Gene3D - 5 102 - -
Tsu05g00931 542 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 4 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00931 Tsu-Chr5 8087084 8093405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00931 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00931 K04523 - gmx:100797539 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00931 05 8087084 8093405 Tsu04g03596 04 45007625 45021084 PCT