Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00928 ATGAAGGTTTCTGAGGACAAGAGTTTTAACTCAAACTCAATCAACCCCACCAATTTTCAAGGAGGGTTAGATTCTAGAAAGATTGGGCAAAACAGAAGAGTGTTGGGAGTGATTAATCAGAATCTGGTTGTGGAAGGAAGACCATATCCTTGTGTTGTTAACAAAAGAGCATTATCAGAAAGAAATGAGGTTTGTGAAAAGAAGCAAGTGGATCCGGGGCATCGACCCATTACTAGGAGGTTTGCTGCAAAAGTTGCCGCCGGCACACAAAAATCTAATGCTGAGGGAACTACCAAAAGGTCAAACTTGGGAAATTCAAATGGATTTGCAGATAGTatatttgttgatgatgaacACAAGCCGGCGGAAGATCAGCCAGTGCCAATGGCTTTAGAGCAAATAGAACCAATAATTAGTGAATCAGATCAGATGGAAGAAGTTGAGATGGAGGATATAATGGAAGAGCCTGTTTTGGACATTGACACCTGTGATGCAGATAACCCTCTCGCGGTTACTGAATATATCGAAGATCTTTATTCTTACTACAGAAAAGTTGAGAATACTGGCTGTGTCTCACCAAATTATATGGCACAACAATTTGACATTAATGAAAGGATGAGGGCCATACTCATTGACTGGCTTATTGAGGTGCATGACAAATTCGACCTGATGCATGAGACACTGTTTCTTACAGTTAATTTGATAGACAGGTTTTTGGAAAAGCAATCAGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTTTCAGATCTGATTGTTATATCAGACCGAGCATACACCCGAAAAGAAGTTCTGGAAATGGAGAAGGTAATGGTCAACACATTGAAGTTTAACATATCTGTGCCAACAGCATATGTTTTCATGAAAAGGTTTCTGAAGGCAGCTCAAGCAGACAGAAAACTTGAGTTGCTAGCTTTCTTCTTGGTAGAGTTATCTCTAGTAGAATATGCAATGCTGAAGTTCCCTCCGTCTCAACTCGCTGCAGCTGCTGTCTATACAGCACAATGCACTATCTATGGTGTCAAACTGTGGAATAAGACGTGTGAATGGCACACCAACTACTCAGAAGATCAACTATTAGAGTGCTCTAGTTTAATGGTTGATTTTCACAAGAAGGCTGCGATGGGGAAACTTACAGGGGCACATAGGAAGTATTGCACATCCAAATTTAGCTTTACTGCAAAATGTGAACCGGCAAGTTTTCTTCTGGAGAACAACAACCTGTAG 1296 0.4043 MKVSEDKSFNSNSINPTNFQGGLDSRKIGQNRRVLGVINQNLVVEGRPYPCVVNKRALSERNEVCEKKQVDPGHRPITRRFAAKVAAGTQKSNAEGTTKRSNLGNSNGFADSIFVDDEHKPAEDQPVPMALEQIEPIISESDQMEEVEMEDIMEEPVLDIDTCDADNPLAVTEYIEDLYSYYRKVENTGCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVSDLIVISDRAYTRKEVLEMEKVMVNTLKFNISVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYAMLKFPPSQLAAAAVYTAQCTIYGVKLWNKTCEWHTNYSEDQLLECSSLMVDFHKKAAMGKLTGAHRKYCTSKFSFTAKCEPASFLLENNNL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00928 431 Pfam Cyclin, N-terminal domain 177 303 IPR006671 -
Tsu05g00928 431 SMART Cyclin_C_2 305 422 IPR004367 -
Tsu05g00928 431 PANTHER CYCLIN-B2-1 21 425 - -
Tsu05g00928 431 MobiDBLite consensus disorder prediction 1 25 - -
Tsu05g00928 431 SUPERFAMILY Cyclin-like 304 422 IPR036915 -
Tsu05g00928 431 SUPERFAMILY Cyclin-like 166 302 IPR036915 -
Tsu05g00928 431 ProSitePatterns Cyclins signature. 207 238 IPR006671 -
Tsu05g00928 431 SMART cyclin_7 309 391 IPR013763 -
Tsu05g00928 431 SMART cyclin_7 212 296 IPR013763 -
Tsu05g00928 431 MobiDBLite consensus disorder prediction 85 112 - -
Tsu05g00928 431 PANTHER CYCLINS 21 425 IPR039361 -
Tsu05g00928 431 CDD CYCLIN 303 390 IPR013763 -
Tsu05g00928 431 Gene3D - 177 416 - -
Tsu05g00928 431 MobiDBLite consensus disorder prediction 90 109 - -
Tsu05g00928 431 PIRSF Cyclin_A_B_D_E 23 430 IPR039361 -
Tsu05g00928 431 Gene3D - 191 303 - -
Tsu05g00928 431 CDD CYCLIN 206 295 IPR013763 -
Tsu05g00928 431 Pfam Cyclin, C-terminal domain 305 420 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00928 Tsu-Chr5 8058111 8061456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00928 14 426 Core Cell Cycle Gene Families AT1G20610 56.398 6.74e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00928 K21777 - gmx:100798068 696.427