LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g00899	ATGGTGATCGAGAACGACATTGAAAGTTGCGGAAGTAGAGCGGTTCAATCACACGCGAATCCACGTCATCACCGTCAAAAGCTTGAAGTATATAATGAAGTTCTTCGTCGAATTCTTGATTCCGATTCCGAAGAAGCTCATGTTCCTGGTTTCGATGATCAACTTTGGCTTCACTTCAATCGTCTTCCTGCTAGGTATGCATTGGATGTGAATGTGGAAAGAGCTGAAGATGTTCTTGCTCATAAAAGATTGCTCGAGTTGGCGAAGGATCCAGCTAATCGTCCGGCATTTCAAGTTCGCTTAGTACAGGTATATCCTTTTGGTAGTACACATTATAATGATTCTTCGGTCCATTCAGATCGTTCTGAGAAAGATGATGCACAAAGTTCTCTTAACTATTCTTTAAAGCAGGGAATTCATCCACCACCTACGTTTGGTTCTTCCTCTAACCTTGAAGCTCTTgcacttcaaacaaataaaaataacattgaaGATGGAGACAATGCTATGGGCGTGACACCAAATTTTAACCGGCCCATGCACGAGATTACCTTTTCAACAATTGACAAGCCTAAACTCCTTAGTCAGTTAACTTTAATTCTTGGTGAACTTGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCTCTGATGGATTTTCCCTGGATGTATTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTGTTGGAAAAGGAAATTTGGAAGGTTAAGGACCAATATCTGTCAAATCAGGGCATACTTTATTCCGTAAATGATCAATACCAAACGAGGACGGAATCCTCCCCTGATTGCATACAAATACCATCTGATGGAGCTGATGTCTGGGAAATTGATCCCAGCCAGctaaaatatgaaaacaaagTTGGCTCTGGATCATTTGGCGACTTGTTCAGAGGCAGTTATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGCTGAAAGAGTTTGCGCAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAACGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACTGGTAAATAG	1116	0.4005	MVIENDIESCGSRAVQSHANPRHHRQKLEVYNEVLRRILDSDSEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLELAKDPANRPAFQVRLVQVYPFGSTHYNDSSVHSDRSEKDDAQSSLNYSLKQGIHPPPTFGSSSNLEALALQTNKNNIEDGDNAMGVTPNFNRPMHEITFSTIDKPKLLSQLTLILGELGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEKEIWKVKDQYLSNQGILYSVNDQYQTRTESSPDCIQIPSDGADVWEIDPSQLKYENKVGSGSFGDLFRGSYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTGK	371

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu05g00899	371	SUPERFAMILY	ACT-like	180	245	IPR045865	-
Tsu05g00899	371	Gene3D	Phosphorylase Kinase; domain 1	285	370	-	-
Tsu05g00899	371	SUPERFAMILY	Protein kinase-like (PK-like)	277	369	IPR011009	-
Tsu05g00899	371	Pfam	Protein tyrosine and serine/threonine kinase	295	369	IPR001245	GO:0004672\|GO:0006468
Tsu05g00899	371	ProSitePatterns	Protein kinases ATP-binding region signature.	301	322	IPR017441	GO:0005524
Tsu05g00899	371	CDD	ACT_TyrKc	180	246	-	-
Tsu05g00899	371	PANTHER	ACT-LIKE TYROSINE KINASE FAMILY PROTEIN	15	369	-	-
Tsu05g00899	371	ProSiteProfiles	Protein kinase domain profile.	295	371	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Tsu05g00899	371	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	15	369	-	-
Tsu05g00899	371	ProSiteProfiles	ACT domain profile.	182	262	IPR002912	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g00899	Tsu-Chr5	7796629	7802617	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g00899	2	369	MAP Kinase Kinase Kinase	AT4G35780	64.075	1.83e-158	455

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Tsu05g00899		PK_Tyr_Ser-Thr	1.1e-13	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g00899	-		-	gmx:100816767	645.195

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g03402	04	43262346	43263389	Tsu05g00899	05	7796629	7802617	PCT

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