LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g00897	atgttgaattTTTCAACAGTTGTGTATAATCCTCCTCAACCCAACAcactcttcttctcttccttcCCATTTTTCCATTCTTCTCTCACACCCCACCGCAAGTTTCAATCTCTCAAATTTCCCACAAACTCTAACCTCCACAATTCTCTCTCCACATCACACCAACATGATGATAACAACAactatgaagaagaagaacatgtCATCGGAGATTGTCTTGTctttgaagaaggaatttttGAAGACCCCATTTTTCCTTCCGACAACCTCGtagacaacaaaaaaacaacaccCATTTCGaagcaaaagaagaaaaaaacaacaaaagtgaTTGTGTCGGAGAATTTGATTCCTGATAAATGGAGAGAAGTTCAAGCAGAGTTAAACATAACGAAGAAAGATAGGCGTAAGATAGCTCAAGAAATTGAGTTCAATAGTAAAGTTTTGGAGAAGAAAAGAGGTTTGGTTCCTTTGAGAGATATAAATTTGGATGAGTATAAAGCTTATAAAGCAGCTAGAATGGCTAAGTTGAAACCTTTGGTTCTTGATAACCCTCCAAGTTTTAGTTTTGCTGAGAAAGAAGATGATTTTGAAGAGGAATTGAGTGATGGGTCTGGTGATGATGAGAGGGCGAAGCCTAAGAATCCTAGGTGGGCTGTTTATGGGAGAGGTTTGGAAGATGTCAAGGAGTTTTTGAACAGTGAGAGTTATGACCCTGCTGCTAATAAAACTGAAGGTCGTCCTAAGTTGTTTACTAGTGAGGAGAAGGCTTTGTTCAATAACAAGAAGCCAAACTTGGAAGTTGCTACTTCAGATAAATGGCTTCCTCTGCACACTCTTGCTGCGAGCGGAGAATCTTTCCTTTTAGAAACTTTGTTGAAGCACAATGTTGATATTAACGCTAAGGATAAGGATGGTTTGACTGCTCTTTACAAAGCAGTAATTGGAAGAAAGCATGCCATAACCAATTATCTCCTAAGAAACTCGGCCAATCCCTTTGTACAAGATAATGGTGGGGCCACCTTGATGCACTACGCTGTACAAACGGCATCAGTCCCAACAATTAAAGTACTCTTGTTGTATAATGTGGATATAAATCTTCCGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAAACTCAGAGAAATGATATAGTGAAGCTTCTGCTGATTAAAGGCGCTGATAAGACATTAAAAAACAAGGATGGTTTAACTCCGCTCGACCTTTGCCTTTACTCTGGTCAAAGTATCAAAACATATGAGCTAATCAAGTTGTTGAAACAGCCTAAAAAACGATATAGAAGTAGAAATGCACGACAAATGGAGCAAAGAAgcaatacaactttttga	1356	0.3562	MLNFSTVVYNPPQPNTLFFSSFPFFHSSLTPHRKFQSLKFPTNSNLHNSLSTSHQHDDNNNYEEEEHVIGDCLVFEEGIFEDPIFPSDNLVDNKKTTPISKQKKKKTTKVIVSENLIPDKWREVQAELNITKKDRRKIAQEIEFNSKVLEKKRGLVPLRDINLDEYKAYKAARMAKLKPLVLDNPPSFSFAEKEDDFEEELSDGSGDDERAKPKNPRWAVYGRGLEDVKEFLNSESYDPAANKTEGRPKLFTSEEKALFNNKKPNLEVATSDKWLPLHTLAASGESFLLETLLKHNVDINAKDKDGLTALYKAVIGRKHAITNYLLRNSANPFVQDNGGATLMHYAVQTASVPTIKVLLLYNVDINLPDNDGWTPLHLAVQTQRNDIVKLLLIKGADKTLKNKDGLTPLDLCLYSGQSIKTYELIKLLKQPKKRYRSRNARQMEQRSNTTF	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g00897	451	PANTHER	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC-LIKE	32	433	-	-
	Tsu05g00897	451	PANTHER	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	32	433	-	-
	Tsu05g00897	451	Gene3D	-	218	342	IPR036770	-
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat region circular profile.	371	403	-	-
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat profile.	371	403	IPR002110	GO:0005515
	Tsu05g00897	451	Pfam	Ankyrin repeats (3 copies)	322	402	IPR002110	GO:0005515
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat region circular profile.	272	304	-	-
	Tsu05g00897	451	SUPERFAMILY	Ankyrin repeat	261	417	IPR036770	-
	Tsu05g00897	451	MobiDBLite	consensus disorder prediction	193	215	-	-
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat profile.	305	337	IPR002110	GO:0005515
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat profile.	272	304	IPR002110	GO:0005515
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat profile.	338	370	IPR002110	GO:0005515
	Tsu05g00897	451	SMART	ANK_2a	371	400	IPR002110	GO:0005515
	Tsu05g00897	451	SMART	ANK_2a	404	433	IPR002110	GO:0005515
	Tsu05g00897	451	SMART	ANK_2a	338	367	IPR002110	GO:0005515
	Tsu05g00897	451	SMART	ANK_2a	305	334	IPR002110	GO:0005515
	Tsu05g00897	451	SMART	ANK_2a	272	301	IPR002110	GO:0005515
	Tsu05g00897	451	Gene3D	-	343	450	IPR036770	-
	Tsu05g00897	451	ProSiteProfiles	Ankyrin repeat region circular profile.	338	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g00897	Tsu-Chr5	7771036	7776348	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g00897	277	421	Ion Channels	AT2G25600	34.247	1.47e-15	77.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g00897	-		-	mtr:MTR_5g022050	598.586