Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00896 ATGGCGGACACCGGCGGTGACGGAAACGGTTTCGTATATCTCCACGGCGACCTCGACTTAACAATTGTAGCCGCTCGCCGGTTACCTAATATGGATATCGTTTCAGAGCGTTTCCGCCGTTGCGTAACCGCTTGCGACACTATTAAATACAATTCAACTTCCGATTCCGCCGACGGTTCTAGTCATCGGAATCATCATCACCGGAGAAAAATCATAACGAGTGATCCGTATGTTACCGTTATGGTGCCGCAAGCAACAGTTGCACGGACACGTGTGCTTAAGAACTCGCCGGATCCTGTGTGGAAAGAACGGTTTAACATTCCGTTAGCACATGCGGTTATGGATTTGGAATTTCGTGTTAAAGACGACGACGTTTTTGGTTCTCAAACTATGGGGACAGTTAAGATTTCGGCACAGAGAATTGCCTCCGGCGACTTAATTTCTGATTGGTTTCCGATTATCGGAGCAAACGGGAAACCGCCGAAACCAGACACTGCGCTTAATTTAGAAATGAAGTTCACGCCAGTGGACCAGAATCCGCTATACCTTCGTGGCATTGCGGCTGATCCGGAACATAAAGGGGTGAGAAATACTTATTTTCCGGTGAGAAAGGGAAGCACTGTGAGGCTTTACCAGGATGCACATTGTCATATTCCAGATGGAATGGCGGAGATTAAGCTTGATGGTGGAAAGGTTTATAAACCGGAGAATTGTTGGGAAGATATATGCTATGCTATAACGGAAGCACATCACATGATTTATTTAGTGGGTTGGTCAATCTACCATAAGATTAAGCTTGTTAGGGAACCTTCTAGAGAGTTGCCGCGTGGTGGCGATTTAACACTTGGTGAATTGCTTAAGTATAAGTCTGAAGAAGGTGTGAGAGTTTTATTGCTTGTTTGGGATGATAAAACTTCCCATGATAAGGTCTTCTTCAAGACGACTGGAGTAATGGAGACTCATGATGAGGAAACTAGAAAGTTTTTCAAGCATTCTTCTGTCATGTGTGTTTTGGCGCCTCGTTATGCTAGCAGTAAGATGAGCTTCTTTAAGCAACAAGTTGTTGGAACCGTTTTCACACACCACCAAAAATGTGTCATTTTGGACTCACAGGCTGCTGGTAATAACAGAAAGATTACCACTTTTATAGGAGGTCTTGATTTGTGTGATGGTCGCTATGATACACCTGAGCATCGACTTTTTCGTGACCTTGATACTGTATTTGCCGGTGATTTCCACAACCCTACATTTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGatattcttattaattttgaaCAGCGATGGAGAAAATCAACCAAGTGGAAAGAGTTTgcaattcttttcaaaaaagcATCTCAGTGGAATGATGATGCTTTAATAAGAGTAGAACGCATCTCGTGGATATTAAGTCCTTCTAATCCTCCCTCAAAGAATGATTTTACATCTATTCCAGCGGATGATCCTTTGGTATGGGTTTCCAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATATTCCGCTCCATTGACTCAGGGTCCTTGAAAGGATTTCCCAAACGTTTTGAGGATGCTCTATCCCAGAATCTCATATGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGGATACATCCAAGCTATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAGTATTTCATTGGATCTTCATATGCATGGCCATCTTACAAAGATGCAGGGGCTGATAATCTTATCCCAATGGAGTTGGCACTGAAAATTGCTAGCAAAATTAAAGCTAAGGAGAGATTTGCTATTTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAATCTGGAGCTGTGCAAGAAATCCTTTTCTGGCAGGGTCAGACAATGCAAATGATGTATAATGTTGTTGCTAACGCATTGAAATCAATGCAACTTGGTGATGTGCACCCACAAGATTACCTCAATTTCTATTGCCTTGGTAATCGGGAACACTTCAATGAAGAAAGCTCAAGCTCAAATGGTGCTCCGATCTCTGGAGCATATAAATACCGCCGAAATATGATTTATGTGCATGCCAAGGGGATGATCGTGGATGATGAATATGTTATAGTGGGATCTGCTAACATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTTCATATCAACCCCATCACACATGGTCTGCGAGAAGAAAACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGCAGAGCATCTTGGGATGTTAGATGAAACTTTTAAAGAACCAGAGAGATTGGAGTGTGTGCGTAAAGTGAATGAAATTGCAAACGATAATTGGAGAATTTACTCTTCTGAAGAAATGTCAGTGCTACAGGGACATCTTCTTAAGTATCCTGTACAAATAGATTCTGATGGCCAGATCAGTTCATTACCTGATTGTGAGAATTTCCCAGATGCCGGTGGTAAGATACTGGGGGCTCATTCCGCAACAATTCCGGATATCTTAACAACGTAA 2577 0.4175 MADTGGDGNGFVYLHGDLDLTIVAARRLPNMDIVSERFRRCVTACDTIKYNSTSDSADGSSHRNHHHRRKIITSDPYVTVMVPQATVARTRVLKNSPDPVWKERFNIPLAHAVMDLEFRVKDDDVFGSQTMGTVKISAQRIASGDLISDWFPIIGANGKPPKPDTALNLEMKFTPVDQNPLYLRGIAADPEHKGVRNTYFPVRKGSTVRLYQDAHCHIPDGMAEIKLDGGKVYKPENCWEDICYAITEAHHMIYLVGWSIYHKIKLVREPSRELPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFFKTTGVMETHDEETRKFFKHSSVMCVLAPRYASSKMSFFKQQVVGTVFTHHQKCVILDSQAAGNNRKITTFIGGLDLCDGRYDTPEHRLFRDLDTVFAGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFAILFKKASQWNDDALIRVERISWILSPSNPPSKNDFTSIPADDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRFEDALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIKAKERFAIYIVLPMWPEGDPKSGAVQEILFWQGQTMQMMYNVVANALKSMQLGDVHPQDYLNFYCLGNREHFNEESSSSNGAPISGAYKYRRNMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGSYQPHHTWSARRKHPHGQIYGYRMSLWAEHLGMLDETFKEPERLECVRKVNEIANDNWRIYSSEEMSVLQGHLLKYPVQIDSDGQISSLPDCENFPDAGGKILGAHSATIPDILTT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00896 858 SMART C2_3c 17 150 IPR000008 -
Tsu05g00896 858 SUPERFAMILY Phospholipase D/nuclease 195 463 - -
Tsu05g00896 858 SMART pld_4 703 730 IPR001736 GO:0003824
Tsu05g00896 858 SMART pld_4 357 392 IPR001736 GO:0003824
Tsu05g00896 858 Gene3D Endonuclease Chain A 531 751 - -
Tsu05g00896 858 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Tsu05g00896 858 Gene3D C2 domain 14 184 IPR035892 -
Tsu05g00896 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Tsu05g00896 858 PIRSF PLD_plant 6 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tsu05g00896 858 Gene3D Endonuclease Chain A 223 476 - -
Tsu05g00896 858 PANTHER PHOSPHOLIPASE D DELTA 11 858 - -
Tsu05g00896 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Tsu05g00896 858 PANTHER PHOSPHOLIPASE D 11 858 IPR015679 -
Tsu05g00896 858 Pfam Phospholipase D Active site motif 703 730 IPR001736 GO:0003824
Tsu05g00896 858 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Tsu05g00896 858 Pfam C2 domain 16 153 IPR000008 -
Tsu05g00896 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 176 IPR035892 -
Tsu05g00896 858 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Tsu05g00896 858 SUPERFAMILY Phospholipase D/nuclease 554 788 - -
Tsu05g00896 858 CDD C2_plant_PLD 12 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00896 Tsu-Chr5 7756760 7764340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00896 12 694 Phospholipase D Gene Family (Wang group) AT4G35790 70.247 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00896 K01115 - gmx:100801787 1491.86