Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00888 ATGACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGCTTGTTGAGTGGGAGACTTGTGCGTGAGAGGATCGGTCCGGCCATGTTGAGTGCAGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCCGTAGATTCAGTTGCGAAAAtcccaaaaatcaaaatcaccgCGGACAATATGGATGCATCAGGGGAGAAAGTTTCGTGTTCAGTTTGTCTCCAGGACTTTCAACTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCACCTTCCTTGCATAGATATGTGGCTCTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 531 0.4087 MTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVAKIPKIKITADNMDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00888 176 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Tsu05g00888 176 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 176 IPR044523 -
Tsu05g00888 176 SUPERFAMILY RING/U-box 124 176 - -
Tsu05g00888 176 Pfam Ring finger domain 130 173 IPR001841 -
Tsu05g00888 176 SMART ring_2 131 172 IPR001841 -
Tsu05g00888 176 CDD RING-H2_PA-TM-RING 131 173 - -
Tsu05g00888 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 176 IPR013083 -
Tsu05g00888 176 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00888 Tsu-Chr5 7675158 7676633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00888 1 176 C3H Transcription Factor Family AT5G66070 81.818 8.94e-102 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00888 - - mdm:103401042 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00888 05 7675158 7676633 Tsu04g03559 04 44730912 44732620 PCT