Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00887 ATGTATGGTAATAACACTAGTAAGACCTCTTCTAGCTCTATCAGGGATTTTACGGTTCTCAAACATTTCAAGGTTAAAATTCATCATCCTATTGCTCCAGTGGTTAAAGAAGTCTTATGGAACCCTCATTTGCTTAATTGGATTAAATGTAATATTGATGGAGCCTCAAAAGCATCAAAAGTTGGTGGTGCGATGACAGATATTGCTCTGCATCATCTTCCCACCTCAATGGGGTTACTATGTTCTAAACCTCTCCGGCAGTGGAGGATATTTCTGGACTTTTCTCGCGAGTTCCTGGATTGTTTCCGGCAGTTCCCACTGCGTCAGTGGATGGAATCCTTGAATGCACGATTCTTCATGTTACAAGTTATCATTTTGACTATTGCCATCTCTCACATAGTGGCTAGTGCCAGTGATGGAGGTATGCAACCAAATGTCACGGTGGCTAAGGATGGCAGTGGCCAATATACCACGGTCACTGACGCCATCAATTCATATCCAACAAATTACCAAGGTCGATTCACTATCTATGTTAAGTCCGGAATCTACAATGAGTACATAACTGTTGATGAGGGAAAACAAAACATTCTCTTGTATGGTGATGGTCCAACCAACACCATTATCACCGGAAGAAAGAACAGTACGGATGGACTCCCAATGCCGCTAACTGCCACATTCACCACCTTTGCTAAATTTTTTACTGCTAAGTCCATTACATTTGAGAATACTGCTGGCCCAGAAGGTAAACAAGCAGTAGCACTCCGCATTGTAGGTATTCACTCAGCATTCTTCAATTGTGCATTCCGGGGCTATCAAGACACTCTATACGTAGACAAGGGCTTTCAGTTCTACCGTAACTGTGAGATCTCAGGAACCGTGGATTTCATATATGGTCATTCGGCTACCTTGATCCAAAACTCTACAATTTTGGTGAGAAAGCCTACTCAAGGACAAGACAATGTAGTGGTGGCAGATGGCACTGTCCGATACAGCAAGTTCAGTACCGGTATAGTCTTGCAAAACTGCTTTATCATTCCAGATGTTGAGCTAAAGCCTAATCTACAAACAGTCAAGACTTACTTGGCAAGACCATGGGAGCCATTTTCAACTGCAGTGTTCCTTAATAATTACATTGATGGTTTTGTTCGAAGAGATGGATATAGGATTTGGAGCAATGATCAACCAAACATCAAAACCCCTTACTTTGCAGAATTTGGCAACACTGGACCTGGTGCCAATGCTACAGAAAGAGTCAAATGGGCCAAAGGCCTTATTAGCAAGAGGGCGGCTGCTATATTCACAGCTGAGCGGTTCATTCATGCTAGCACTTGGTTGCCCGCCACCGGCATTCAATACGATCATGGTTTGCATTAG 1374 0.4301 MYGNNTSKTSSSSIRDFTVLKHFKVKIHHPIAPVVKEVLWNPHLLNWIKCNIDGASKASKVGGAMTDIALHHLPTSMGLLCSKPLRQWRIFLDFSREFLDCFRQFPLRQWMESLNARFFMLQVIILTIAISHIVASASDGGMQPNVTVAKDGSGQYTTVTDAINSYPTNYQGRFTIYVKSGIYNEYITVDEGKQNILLYGDGPTNTIITGRKNSTDGLPMPLTATFTTFAKFFTAKSITFENTAGPEGKQAVALRIVGIHSAFFNCAFRGYQDTLYVDKGFQFYRNCEISGTVDFIYGHSATLIQNSTILVRKPTQGQDNVVVADGTVRYSKFSTGIVLQNCFIIPDVELKPNLQTVKTYLARPWEPFSTAVFLNNYIDGFVRRDGYRIWSNDQPNIKTPYFAEFGNTGPGANATERVKWAKGLISKRAAAIFTAERFIHASTWLPATGIQYDHGLH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00887 457 Pfam Pectinesterase 145 441 IPR000070 GO:0030599|GO:0042545
Tsu05g00887 457 PANTHER PECTINESTERASE 136 456 - -
Tsu05g00887 457 Gene3D - 139 456 IPR012334 -
Tsu05g00887 457 PANTHER PECTINESTERASE 136 456 - -
Tsu05g00887 457 SUPERFAMILY Pectin lyase-like 143 454 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00887 Tsu-Chr5 7648223 7653973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00887 148 456 Carbohydrate Esterase AT3G62170 46.006 1.30e-87 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00887 K01051 - gmx:100808559 388.652