Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00880 atgacaCTCAAAAGCTTTGTATCACTTGTCTTCAATTTAATTGGCCTAGAAGATTCACAAACAAACAAGGATGCAACTTTACCTTACATTGTTGCTACCTCAATTGTTCCAAAGAAGATCAATCAACAATCATCAGAATCTtcaaaaacaacatcaaatctTATTGAGAAAAATAATGATGTTGGTTTATGTTGTGTGTGTTTGTCAATGTTAAACAACAAAGATGAAATTCGTGTACTTCCTTGTTTACATGAATTTCATGAGGTTTGTGTAAATAGTTGGCTAAAGGGTCATCAAAAAACATGTCCATTATGTCGTTTTTCAATGGGAGGTGAAGAAAAGTCTCATCATGGTGAAATGTTTAGTGATGAGATGCTAATATGGTTTTCTTCTTTCCATATAACTGCAGGATATGGTGATAGAGCAATTGTTGAGTTTGGTCTGGCTGCGGATTTTTCATGA 462 0.3225 MTLKSFVSLVFNLIGLEDSQTNKDATLPYIVATSIVPKKINQQSSESSKTTSNLIEKNNDVGLCCVCLSMLNNKDEIRVLPCLHEFHEVCVNSWLKGHQKTCPLCRFSMGGEEKSHHGEMFSDEMLIWFSSFHITAGYGDRAIVEFGLAADFS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00880 153 PANTHER GB|AAF27103.1 3 120 - -
Tsu05g00880 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 112 IPR013083 -
Tsu05g00880 153 SUPERFAMILY RING/U-box 38 109 - -
Tsu05g00880 153 PANTHER TARGET OF ERK KINASE MPK-1 3 120 - -
Tsu05g00880 153 SMART ring_2 64 105 IPR001841 -
Tsu05g00880 153 Pfam Ring finger domain 64 106 IPR001841 -
Tsu05g00880 153 CDD RING-H2_PA-TM-RING 64 106 - -
Tsu05g00880 153 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00880 Tsu-Chr5 7588820 7591083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00880 57 106 C3H Transcription Factor Family AT5G45290 49.020 3.02e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00880 - - mtr:MTR_5g022770 227.254