Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00860 ATGAGTAATAAGTATAGATACATGTTTAATAGACTATTCAGGTTTGCAAATTCATGGAAGAAAAGTAACTCACCAAGAAGTAGAAGAATTTTCAACAGAGATGTTGAAAAAGAACAATTTCAATATGCTAGTAGTCATTGCCTTTCATCTTACTACAGTGTTTTTGTGGTTAGATTAGCAATCATGgTAATGTTAGCCATCTTGATAGGGCTATTGACCATATTAACATGGCATTTTACGAAGATTTATACGGCGAAATCATTGAGTAGTTTAGCGTATGGTTTGCGTTATGAACTTCTACAACGTCCGATTTTGAGGATGTGGAACATTTTGAACTCGACTTCTGAAATTACAACAGCTCAAGTCAAATTGTCTCAGTATGTTATCAGACGTTATAGCAATCCTGCATCTCAAGCAGAACAAGTTGAGTTATATGAAGCAATGAGAGCAGTGACATGGTCACTATTTGCTAGCAGAAAAGCTCTAAACTCAATAACAATCAATTACAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAAGATAACAATACATTTTACATCTACTCAGATCTTTCAAATTACTCCATGGTTGCAACAACTTCTAACATGGTCAATACACTTTCAGCTCATCAAGCATGGGATGATAAAACAATTCATGGAAATTTTTCAGCAATTTGGTATAGAGAACCACTTGATCCAGTCACGGGCGAAAAAATCGGAAAAGCAATGAAAATAGCACCAGAAGATTTAATAAACATAGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAGTTTACAGATTCGCCGTTGCTTTCGGCGGCATTACCTGTTTGGGATTCTGAGAATAAAAGTATTATGGCTGTTGTTGGTGTAACAACTGCTTTTTATAGTGTTGGACAGTTAATGAGAGAACTTGTTGAAATGCATAGTGGTCATATGTATTTGACTTCTCAACAAGGTTATTTACTTGCAACTTCTACAAGTGCACCTTTACTTAGTAATTCAACTAAGCCACCTAAGCTTAAAATGGCTGTGGATTGTGAAGATGGTATTATAAGACTTGGAGCTGAGTGGTTGCAAAGAACTTATGGGAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAACTTGGTCATCAGCAGTATTATATCGACTCATTTTACCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGGCAGGTGGATGAGAGAGCCTTCAAAACTTTGGTTATTCTGATATCTGCATCTTTATGTATTTTAGTGATTGGTTGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTTAGAGCAGAATTGATTAGTCAACTTGAAGCAAGAAGGAAGGCAGAAGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTAAGGACACCTATGGCAGCAGTGATTGGATTGCTGGACATTCTTATATCAGATGATTGTCTCACAAATGAACAATATTCGACAGTTactcaaataagaaaatgttcaaCGGCTCTACTTCGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGAAGAAGCAGAATTTGATTTAGGACGCGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGTATTAATCACAATGTGGAGACTGTTTTAGACCTTTCTGGTATGATTATAAATTATGTGGTTGCATCTTTAGAGTTTAACAAGTTTATGATGCATTTAATTTTACCAATAACTATTTTCCATGCAGATGATATGCCAAAACTAGTTAGAGGTGATTCTGCTAGGGTGGTTCAAGTATTTGCAAATTTAATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTAATTCTGCGAGGATGGTGTGAATACCCAAATTCTTGCAACGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGGGTTATACATAAGAGCAAAGATAAGATAAATGCAAATCATGCCAAGAGAATATCTTTGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAAGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAACAAGCTGATCCATCGACCACTCGACtGCATGGAGGGACTGGTCTTGGTCTTTGTATTGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAAGGTCAAGGAACATTGATGAGATTATGCTTGCTTCTCAGCGCACCCGTGGATGTCTCGGAACAACATTGTGATGTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGGGCAGATTAATAACATCAAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCGATccataataataacaactttgATGCACACTATCCAATGAATCTTGAAGGATTCAAGTCCAAACTACTTACCATAAAAGATATGAGGAACCCAATTTTTATCATTGTTGTTGACATTGGTTTACTTGACTTAAGCACAGATATATGGAAAGAACAACTTAACTTGCTTCACAAGTATTTCGGAAGAGCAAAATTTGTGTGGATTTTAAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGGCATTTATTAATGGTTAATAAACCTCTTTACAAAGgtaaaattattcatattttggAAGCTGTTATAAAAGAGAGAAATCTTGagctacaaaagaaaaatatgaaagaagGTGATTCACATGAGTTTCTTGAGATTGATTCTACTCAGTTTGATGCTGCCACTAGCTCTGATGATTCTGATATATCTGAAATTAGTGAAAAGCCAATTGTAAAGGTAACCGATGAAAATGAACATTTGGAAGAAAATAACATGAGGAAAGAAGAATCTTGTTCCTCTGAAGACAACAAAACTAAACCATTGTCCTTTGCAATAGAGGCTCATGATAGGGTGACAAGGTCAAGAAAAGAAGTGAATGATAAGAAATCTCTTGAGGGATTAAGAATTTTGCTTGCAGAAGATACACCGGTAATTCAAAGGGTTGCTACTATAATGCTTGAAAAAATGGGagctgttgttgttgctgtaGGTGATGGACAACAAGCAGTAGAAGCTCTCAATTACATGGTCAGTGCTGAAGATTGTAGAAGAGAGTCTCTTCAGAAGGAAAGAAATACAAGAACACAAACTGAGATTTTGGTTTCTCGTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAGGGAACAGGCAAGCACATTCCaattgttgctctcacagcacATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAGAAAATGGTCTCCACCATTCTCTCACTCACTAAACCAACATCTTGA 3618 0.353 MSNKYRYMFNRLFRFANSWKKSNSPRSRRIFNRDVEKEQFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVATTSNMVNTLSAHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSENKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLSNSTKPPKLKMAVDCEDGIIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQQYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSGMIINYVVASLEFNKFMMHLILPITIFHADDMPKLVRGDSARVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCNDSPNFYLDQKKSRVIHKSKDKINANHAKRISLRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPVDVSEQHCDVNLTDNGLVVLLALQGNMGRLITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHNNNNFDAHYPMNLEGFKSKLLTIKDMRNPIFIIVVDIGLLDLSTDIWKEQLNLLHKYFGRAKFVWILNHDTSNTIKTELRRKGHLLMVNKPLYKGKIIHILEAVIKERNLELQKKNMKEGDSHEFLEIDSTQFDAATSSDDSDISEISEKPIVKVTDENEHLEENNMRKEESCSSEDNKTKPLSFAIEAHDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVEALNYMVSAEDCRRESLQKERNTRTQTEILVSRPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKKMVSTILSLTKPTS 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00860 1205 Coils Coil 998 1018 - -
Tsu05g00860 1205 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 472 551 IPR036097 GO:0000155|GO:0007165
Tsu05g00860 1205 PANTHER TWO-COMPONENT HISTIDINE KINASE 616 1019 - -
Tsu05g00860 1205 Gene3D - 472 551 - -
Tsu05g00860 1205 Gene3D - 552 778 IPR036890 -
Tsu05g00860 1205 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 590 - -
Tsu05g00860 1205 PANTHER TWO-COMPONENT HISTIDINE KINASE 1028 1202 - -
Tsu05g00860 1205 Gene3D - 1033 1202 - -
Tsu05g00860 1205 SMART REC_2 1055 1197 IPR001789 GO:0000160
Tsu05g00860 1205 ProSiteProfiles Response regulatory domain profile. 1056 1201 IPR001789 GO:0000160
Tsu05g00860 1205 PANTHER OSMOSENSOR HISTIDINE KINASE 1028 1202 - -
Tsu05g00860 1205 CDD HisKA 485 546 IPR003661 GO:0000155|GO:0007165
Tsu05g00860 1205 CDD REC_hyHK_CKI1_RcsC-like 1057 1197 - -
Tsu05g00860 1205 PRINTS Bacterial sensor protein C-terminal signature 721 731 IPR004358 GO:0016310|GO:0016772
Tsu05g00860 1205 PRINTS Bacterial sensor protein C-terminal signature 703 717 IPR004358 GO:0016310|GO:0016772
Tsu05g00860 1205 PRINTS Bacterial sensor protein C-terminal signature 738 756 IPR004358 GO:0016310|GO:0016772
Tsu05g00860 1205 PRINTS Bacterial sensor protein C-terminal signature 762 775 IPR004358 GO:0016310|GO:0016772
Tsu05g00860 1205 PANTHER OSMOSENSOR HISTIDINE KINASE 1 590 - -
Tsu05g00860 1205 PANTHER OSMOSENSOR HISTIDINE KINASE 616 1019 - -
Tsu05g00860 1205 SMART HKATPase_4 626 778 IPR003594 -
Tsu05g00860 1205 Pfam Response regulator receiver domain 1057 1197 IPR001789 GO:0000160
Tsu05g00860 1205 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 539 774 IPR036890 -
Tsu05g00860 1205 Pfam His Kinase A (phospho-acceptor) domain 485 550 IPR003661 GO:0000155|GO:0007165
Tsu05g00860 1205 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 776 IPR003594 -
Tsu05g00860 1205 SMART HisKA_10 484 550 IPR003661 GO:0000155|GO:0007165
Tsu05g00860 1205 SUPERFAMILY CheY-like 1053 1201 IPR011006 -
Tsu05g00860 1205 ProSiteProfiles Histidine kinase domain profile. 491 778 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00860 Tsu-Chr5 7457968 7464284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00860 6 1205 Histidine Kinase Gene Family AT2G17820 64.105 0.0 1568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g00860 HATPase_c 5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00860 - - gmx:100814068 1884.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00860 05 7457968 7464284 Tsu05g00860 05 7457968 7464284 ECH