Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00843 ATGGGTGACATAGTGAAACAAATATTAACAAAACCGATCCAATTAGCAGACCAAGTAACAAAAGCAGCAGATGAAGCAAGTTCATTCAAACAAGAATGTAACGAACTTAAATCCAAAACAGAAAAACTCGCCGGACTTCTCCGACAAGCAGCAAGAGCAAGTTCCGATCTATACGAACGTCCAACAAAACGAATCATCGAAGAAACAGAACAAGTTCTCGAAAAATCACTTTCCTTAGTCCAAAAATGTCGCGCAAATGGTATCATGAAACGTGTCTTCACCATAATCCCCGCCGCCGCTTTCCGTAAAACATCTTCTCATTTAGAAAACTCAATCGGAGATGTTTCTTGGCTCCTCCGTGTCTCTGCTCCGGCAGATGATCGCGGCGGTGAATATCTTGGACTTCCACCTATTGCTGCTAATGAACCAATTCTTTGCTTCATTTGGGAACAGATCGCTATACTTTACACCGGTTCAATGGAAGATCGATCTGATGCAGCGGCTTCCCTTGTTTCACTTGCACGTGGCAGTGTCCGTTATGGGAAACTTATAATTGAAGAAGGTGGTGTTGGACCACTTTTGAAGCTGATAAAAGAAGGGAATATTGATGGGCAAGAAAATGCTGCTAGAGCTATTGGTTTACTTGGTCGTGATGATGAATGTGTTGAACATATGATTCATGTTGgtgtttgttctgtttttggTAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGGTGTTGTTGCTTGGGCTGTTTCTGAACTTGCTGCTAATTATCCTAAATGTCAAGATCTTTTTGCTCAACATAATATTATAAGGTTACTTGTTGGTCATCTTGCTTTTGAAACTGTTGAAGAACATAGTAAATATGCTATTGTTAGTATGAAACCGACTTCGATTCACGCGGTTGTTATGGCCAGTAATAATAGTAATTCTAATTCTAATCTTAATCCTAAGAAaggaaatgaaaatgaagatgtTGGTGTTGGCGTTGGTGGTGGTAACAATAAGCAGGGTCGCATATCGCATCATCCGTTGGGTGAAAGACCGAGGAATTTGCATAGAGTGATTACAAGTACTATGGCAATTCATGCTGCTTCCAAGCAGAGTAATGAAGGAAATGACCTGGCCAATTCCTATACGCCGCCTAATAGCAATGGACTTGGTAATGGTGGTGGTAAGCAAGGAAATCATGGTAATCATCAGAGAAATTATTCGCATTCGGGAATTAATATGAAGGGAAGGGAAAGTGAAGACCCTGATATTAAGGCAACTATGAAGGAAATGGCAGCAAGAGCTTTATGGCATTTGGCTAAGGATAATGTGGTGATTTGTCGTAGCATTACTGAATCAAGGGCTTTGTTGTGTTTTGCTGTTTTACTTGAGAAAGGACCGGAGGCTGTGCAGTATAATTCTGCGATGGCATTGATGGAGATTACTGCCGTGGCTGAGAAAGATGCTGAATTGAGAAAAtctgcatttaagcctaattCTCCTGCCTGCAAAGCAGTTGTTGATCAAGTGCTTAAGATAATTGAGAAAGCGGATTCGGATCTCCTCATTCCTTGTGTCAGGGTGATTGGAAATTTGGCAAGGACATTCAAGGCTACCGAGACAAGGATGATTGGTCCGTTGGTGAAACTTCTTGACGAAAGAGAGGCAGAGGTTTCCAGGGAGGCGTCAATCGCACTCAAGAAATTTGCCGGCAGTGAAAACTACCTTCATGTTGATCACTCCAAAGCAATTATAAGTGCAGGTGGGGCAAAACACTTGATTCAGCTAGTGTATTTTGGAGAACAAATGGTTCAGATTCCAGCATTGGTTCTGCTCTCTTACATTGCATTACATGTGCCGGATAGCGAAGAACTTGCTCTGGCTGAGGTCCTTGGAGTGCTTGAATGGGCATCCAAACAATCCTTCATGCAACATGATGAAACCCTTGAGACATTGTTGCAAGAAGCCAAGAGTAGGTTGGAGCTTTATCAATCTAGAGGTTCAAGAGGATTCCATCATAAACTGCATCAATAG 2031 0.4067 MGDIVKQILTKPIQLADQVTKAADEASSFKQECNELKSKTEKLAGLLRQAARASSDLYERPTKRIIEETEQVLEKSLSLVQKCRANGIMKRVFTIIPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGGEYLGLPPIAANEPILCFIWEQIAILYTGSMEDRSDAAASLVSLARGSVRYGKLIIEEGGVGPLLKLIKEGNIDGQENAARAIGLLGRDDECVEHMIHVGVCSVFGKILKEGPMKVQGVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKPTSIHAVVMASNNSNSNSNLNPKKGNENEDVGVGVGGGNNKQGRISHHPLGERPRNLHRVITSTMAIHAASKQSNEGNDLANSYTPPNSNGLGNGGGKQGNHGNHQRNYSHSGINMKGRESEDPDIKATMKEMAARALWHLAKDNVVICRSITESRALLCFAVLLEKGPEAVQYNSAMALMEITAVAEKDAELRKSAFKPNSPACKAVVDQVLKIIEKADSDLLIPCVRVIGNLARTFKATETRMIGPLVKLLDEREAEVSREASIALKKFAGSENYLHVDHSKAIISAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELALAEVLGVLEWASKQSFMQHDETLETLLQEAKSRLELYQSRGSRGFHHKLHQ 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00843 676 PANTHER ARMADILLO REPEAT ONLY 2-RELATED 1 671 - -
Tsu05g00843 676 SUPERFAMILY ARM repeat 153 633 IPR016024 -
Tsu05g00843 676 MobiDBLite consensus disorder prediction 368 412 - -
Tsu05g00843 676 MobiDBLite consensus disorder prediction 310 348 - -
Tsu05g00843 676 Coils Coil 645 665 - -
Tsu05g00843 676 MobiDBLite consensus disorder prediction 368 418 - -
Tsu05g00843 676 Coils Coil 19 39 - -
Tsu05g00843 676 Gene3D - 3 121 IPR036537 GO:0007166
Tsu05g00843 676 Gene3D - 497 651 IPR011989 -
Tsu05g00843 676 SMART arm_5 218 258 IPR000225 GO:0005515
Tsu05g00843 676 SMART arm_5 576 616 IPR000225 GO:0005515
Tsu05g00843 676 SMART arm_5 442 482 IPR000225 GO:0005515
Tsu05g00843 676 SMART arm_5 498 533 IPR000225 GO:0005515
Tsu05g00843 676 SMART arm_5 177 217 IPR000225 GO:0005515
Tsu05g00843 676 Gene3D - 150 329 IPR011989 -
Tsu05g00843 676 Gene3D - 417 496 IPR011989 -
Tsu05g00843 676 PANTHER ARMADILLO REPEAT ONLY 4 1 671 - -
Tsu05g00843 676 Pfam Armadillo/beta-catenin-like repeat 183 214 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00843 Tsu-Chr5 7223968 7226432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00843 - - mtr:MTR_5g022240 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00843 05 7223968 7226432 Tsu05g00843 05 7223968 7226432 ECH
Tsu05g00843 05 7223968 7226432 Tsu04g03517 04 44331494 44335379 PCT